[INFO] fetching crate repeatmasker-rs 0.1.0...
[INFO] testing repeatmasker-rs-0.1.0 against 1.100.0-beta.1 for beta-1.100-2
[INFO] extracting crate repeatmasker-rs 0.1.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate repeatmasker-rs 0.1.0
[INFO] finished tweaking crates.io crate repeatmasker-rs 0.1.0
[INFO] tweaked toml for crates.io crate repeatmasker-rs 0.1.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate repeatmasker-rs 0.1.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate repeatmasker-rs 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812
[INFO] running `Command { std: "docker" "start" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.94
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.7
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_builder v4.5.35
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling serde_derive v1.0.219
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling clap v4.5.35
[INFO] [stderr]    Compiling repeatmasker-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 19.75s
[INFO] running `Command { std: "docker" "inspect" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling zerocopy v0.8.35
[INFO] [stderr]    Compiling libc v0.2.171
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling zerocopy-derive v0.8.35
[INFO] [stderr]    Compiling getrandom v0.3.2
[INFO] [stderr]    Compiling rustix v1.0.5
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling linux-raw-sys v0.9.3
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling is-terminal v0.4.16
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling tempfile v3.19.1
[INFO] [stderr]    Compiling serde_json v1.0.140
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling repeatmasker-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 26.22s
[INFO] running `Command { std: "docker" "inspect" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.13s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/repeatmasker-rs/1b9849a6aa047db6/out/repeatmasker_rs-1b9849a6aa047db6)
[INFO] [stdout] 
[INFO] [stdout] running 28 tests
[INFO] [stdout] test tests::alignments_refine_fragment_chain_boundaries ... ok
[INFO] [stdout] test tests::alignments_flow_into_chain_counts_and_tbl ... ok
[INFO] [stdout] test tests::adjudicated_catalog_stats_record_suppressed_counts ... ok
[INFO] [stdout] test tests::encode_repeatmasker_alignment_emits_cigar_caf_and_blocks ... ok
[INFO] [stdout] test tests::build_annotation_chains_merges_exact_family_fragments ... ok
[INFO] [stdout] test tests::load_repeatmasker_alignments_reverse_complements_query_oriented_records ... ok
[INFO] [stdout] test tests::parse_cat_annotation_line_parses_forward_and_reverse_annotations ... ok
[INFO] [stdout] test tests::mask_fasta_records_supports_n_x_and_lowercase_modes ... ok
[INFO] [stdout] test tests::load_repeatmasker_catalog_parses_cat_metadata_and_summary_rows ... ok
[INFO] [stdout] test tests::parse_out_annotation_line_skips_headers ... ok
[INFO] [stdout] test tests::parse_out_annotation_line_treats_trailing_star_as_overlap_marker ... ok
[INFO] [stdout] test tests::fasta_driven_tbl_stats_use_total_length_and_exact_gc_without_mask_output ... ok
[INFO] [stdout] test tests::out_tables_count_global_annotation_ids_across_split_query_sequences ... ok
[INFO] [stdout] test tests::mask_repeatmasker_annotations_to_fasta_masks_cat_annotations ... ok
[INFO] [stdout] test tests::consolidate_mask_intervals_merges_overlaps_and_adjacency ... ok
[INFO] [stdout] test tests::alignments_break_ties_for_identical_family_hits ... ok
[INFO] [stdout] test tests::load_repeatmasker_alignments_parses_synthetic_record_and_metrics ... ok
[INFO] [stdout] test tests::mask_repeatmasker_out_to_fasta_masks_real_files_and_reports_stats ... ok
[INFO] [stdout] test tests::load_repeatmasker_catalog_parses_legacy_cat_footer_lines ... ok
[INFO] [stdout] test tests::write_chain_tsv_exports_fragment_chains ... ok
[INFO] [stdout] test tests::chain_counts_flow_into_catalog_stats_and_tbl ... ok
[INFO] [stdout] test tests::summary_and_tbl_outputs_use_adjudicated_annotations ... ok
[INFO] [stdout] test tests::adjudicate_annotations_suppresses_contained_lower_score_duplicates_and_short_fragments ... ok
[INFO] [stdout] test tests::write_repeatmasker_tbl_reports_core_repeatmasker_sections ... ok
[INFO] [stdout] test tests::write_gff_and_out_exports_match_expected_core_fields ... ok
[INFO] [stdout] test tests::parse_out_annotation_line_parses_forward_and_reverse_annotations ... ok
[INFO] [stdout] test tests::write_alignment_tsv_exports_alignment_encodings ... ok
[INFO] [stdout] test tests::write_chain_tsv_with_alignments_exports_refined_fragment_chains ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 28 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/process_repeats_rs.rs (/opt/rustwide/target/debug/build/repeatmasker-rs/1818225e505b4c3f/out/process_repeats_rs-1818225e505b4c3f)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/repeatmasker_rs.rs (/opt/rustwide/target/debug/build/repeatmasker-rs/35da3cf2820971f3/out/repeatmasker_rs-35da3cf2820971f3)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stderr]    Doc-tests repeatmasker_rs
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - (line 48) - compile ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812", kill_on_drop: false }`
[INFO] [stdout] 6812ff17041f2c7b4abfc5c544e2494fa8b2a2d6d886af2c32963276b4805812
