[INFO] cloning repository https://github.com/alejandrogzi/gxt2bed
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/alejandrogzi/gxt2bed" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falejandrogzi%2Fgxt2bed", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falejandrogzi%2Fgxt2bed'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 24b8ffe1a101624d90a76855cb733b781e6f72bc
[INFO] testing alejandrogzi/gxt2bed against 1.99.0-beta.8 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Falejandrogzi%2Fgxt2bed" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/alejandrogzi/gxt2bed
[INFO] finished tweaking git repo https://github.com/alejandrogzi/gxt2bed
[INFO] tweaked toml for git repo https://github.com/alejandrogzi/gxt2bed written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/alejandrogzi/gxt2bed on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/alejandrogzi/gxt2bed already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded tempfile v3.24.0
[INFO] [stderr]   Downloaded time-core v0.1.7
[INFO] [stderr]   Downloaded clap_lex v0.7.7
[INFO] [stderr]   Downloaded simple_logger v5.1.0
[INFO] [stderr]   Downloaded quote v1.0.43
[INFO] [stderr]   Downloaded deranged v0.5.5
[INFO] [stderr]   Downloaded memmap2 v0.9.9
[INFO] [stderr]   Downloaded simd-adler32 v0.3.8
[INFO] [stderr]   Downloaded find-msvc-tools v0.1.8
[INFO] [stderr]   Downloaded time-macros v0.2.25
[INFO] [stderr]   Downloaded zstd-safe v7.2.4
[INFO] [stderr]   Downloaded colored v3.1.1
[INFO] [stderr]   Downloaded zstd v0.13.3
[INFO] [stderr]   Downloaded bzip2 v0.6.1
[INFO] [stderr]   Downloaded proc-macro2 v1.0.105
[INFO] [stderr]   Downloaded libbz2-rs-sys v0.2.2
[INFO] [stderr]   Downloaded clap v4.5.54
[INFO] [stderr]   Downloaded cc v1.2.53
[INFO] [stderr]   Downloaded flate2 v1.1.8
[INFO] [stderr]   Downloaded syn v2.0.114
[INFO] [stderr]   Downloaded clap_builder v4.5.54
[INFO] [stderr]   Downloaded time v0.3.45
[INFO] [stderr]   Downloaded zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]   Downloaded libc v0.2.180
[INFO] [stderr]   Downloaded genepred v0.0.14
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335
[INFO] running `Command { std: "docker" "start" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling find-msvc-tools v0.1.8
[INFO] [stderr]    Compiling proc-macro2 v1.0.105
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling quote v1.0.43
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling unicode-ident v1.0.22
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling colorchoice v1.0.4
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling simd-adler32 v0.3.8
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling time-core v0.1.7
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling num-conv v0.1.0
[INFO] [stderr]    Compiling powerfmt v0.2.0
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling num_threads v0.1.7
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling libbz2-rs-sys v0.2.2
[INFO] [stderr]    Compiling itoa v1.0.17
[INFO] [stderr]    Compiling time-macros v0.2.25
[INFO] [stderr]    Compiling deranged v0.5.5
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling clap_builder v4.5.54
[INFO] [stderr]    Compiling flate2 v1.1.8
[INFO] [stderr]    Compiling allocator-api2 v0.2.21
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling foldhash v0.2.0
[INFO] [stderr]    Compiling syn v2.0.114
[INFO] [stderr]    Compiling colored v3.1.1
[INFO] [stderr]    Compiling log v0.4.29
[INFO] [stderr]    Compiling indoc v2.0.7
[INFO] [stderr]    Compiling bzip2 v0.6.1
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling memmap2 v0.9.9
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling cc v1.2.53
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling time v0.3.45
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling simple_logger v5.1.0
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling hashbrown v0.16.1
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling genepred v0.0.14
[INFO] [stderr]    Compiling gxf2bed v0.3.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 30.08s
[INFO] running `Command { std: "docker" "inspect" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling gxf2bed v0.3.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1.68s
[INFO] running `Command { std: "docker" "inspect" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/gxf2bed-bc3933400af35c06)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/gxf2bed-27150593e6c6a339)
[INFO] [stderr]      Running tests/convert_gff.rs (/opt/rustwide/target/debug/deps/convert_gff-b66b4a1ff7a1347b)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test convert_gff_gene_parent_uses_configured_parent_attribute ... ok
[INFO] [stdout] test convert_gff_to_bed12 ... ok
[INFO] [stdout] test convert_gff_mrna_parent_uses_configured_parent_attribute ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/convert_gtf.rs (/opt/rustwide/target/debug/deps/convert_gtf-e9b6082f2ce3540d)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test convert_gtf_to_bed12 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]      Running tests/convert_gzip.rs (/opt/rustwide/target/debug/deps/convert_gzip-e810386d7b4dee89)
[INFO] [stdout] running 1 test
[INFO] [stdout] test convert_gzipped_gtf ... ok
[INFO] [stderr]      Running tests/detect.rs (/opt/rustwide/target/debug/deps/detect-a4f1ed0867d35adb)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test detect_plain_gtf ... ok
[INFO] [stdout] test detect_gff3_gz ... ok
[INFO] [stdout] test detect_rejects_unknown ... ok
[INFO] [stdout] test detect_gtf_zstd ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests gxf2bed
[INFO] [stdout] 
[INFO] [stdout] running 30 tests
[INFO] [stdout] test src/cli.rs - cli::BedType::default (line 137) ... ignored
[INFO] [stdout] test src/cli.rs - cli::BedType::fmt (line 199) ... ignored
[INFO] [stdout] test src/cli.rs - cli::BedType::from_str (line 166) ... ignored
[INFO] [stdout] test src/config.rs - config::Config::from_args (line 42) ... ignored
[INFO] [stdout] test src/convert.rs - convert::Gff::from_gxf_with_options (line 556) ... ignored
[INFO] [stdout] test src/convert.rs - convert::Gff::from_mmap_with_options (line 581) ... ignored
[INFO] [stdout] test src/convert.rs - convert::Gtf::from_gxf_with_options (line 504) ... ignored
[INFO] [stdout] test src/convert.rs - convert::Gtf::from_mmap_with_options (line 529) ... ignored
[INFO] [stdout] test src/convert.rs - convert::GxfReader::from_gxf_with_options (line 456) ... ignored
[INFO] [stdout] test src/convert.rs - convert::GxfReader::from_mmap_with_options (line 479) ... ignored
[INFO] [stdout] test src/convert.rs - convert::build_reader_options (line 245) ... ignored
[INFO] [stdout] test src/convert.rs - convert::build_writer_options (line 295) ... ignored
[INFO] [stdout] test src/convert.rs - convert::open_reader (line 213) ... ignored
[INFO] [stdout] test src/convert.rs - convert::process_input (line 109) ... ignored
[INFO] [stdout] test src/convert.rs - convert::process_reader (line 162) ... ignored
[INFO] [stdout] test src/convert.rs - convert::render_chunk (line 334) ... ignored
[INFO] [stdout] test src/convert.rs - convert::run (line 41) ... ignored
[INFO] [stdout] test src/convert.rs - convert::write_output (line 422) ... ignored
[INFO] [stdout] test src/convert.rs - convert::write_record (line 378) ... ignored
[INFO] [stdout] test src/detect.rs - detect::Compression::is_compressed (line 29) ... ignored
[INFO] [stdout] test src/detect.rs - detect::compression_from_extension (line 171) ... ignored
[INFO] [stdout] test src/detect.rs - detect::detect_input_kind (line 68) ... ignored
[INFO] [stdout] test src/detect.rs - detect::extension_lowercase (line 113) ... ignored
[INFO] [stdout] test src/detect.rs - detect::format_from_extension (line 141) ... ignored
[INFO] [stdout] test src/detect.rs - detect::nested_extension (line 202) ... ignored
[INFO] [stdout] test src/lib.rs - (line 11) ... ignored
[INFO] [stdout] test src/lib.rs - (line 37) ... ignored
[INFO] [stdout] test src/lib.rs - (line 58) ... ignored
[INFO] [stdout] test src/lib.rs - (line 79) ... ignored
[INFO] [stdout] test src/memory.rs - memory::max_mem_usage_mb (line 15) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 30 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335", kill_on_drop: false }`
[INFO] [stdout] eb441bab0cd15ac715164efc82cf700a0524eb6810b3754ce41738ce32a80335
