[INFO] fetching crate velocyto-rs 0.1.0...
[INFO] testing velocyto-rs-0.1.0 against 1.99.0-beta.8 for beta-1.100-2
[INFO] extracting crate velocyto-rs 0.1.0 into /workspace/builds/worker-7-tc1/source
[INFO] started tweaking crates.io crate velocyto-rs 0.1.0
[INFO] finished tweaking crates.io crate velocyto-rs 0.1.0
[INFO] tweaked toml for crates.io crate velocyto-rs 0.1.0 written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate velocyto-rs 0.1.0 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate velocyto-rs 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded nalgebra-macros v0.2.2
[INFO] [stderr]   Downloaded instant v0.1.13
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[INFO] [stderr]   Downloaded num-complex v0.2.4
[INFO] [stderr]   Downloaded env_logger v0.11.10
[INFO] [stderr]   Downloaded statrs v0.17.1
[INFO] [stderr]   Downloaded simba v0.8.1
[INFO] [stderr]   Downloaded linfa-reduction v0.7.1
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded argmin-math v0.4.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded noodles-bam v0.90.0
[INFO] [stderr]   Downloaded noodles-sam v0.85.0
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[INFO] [stderr]   Downloaded argmin v0.10.0
[INFO] [stderr]   Downloaded zlib-rs v0.6.3
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[INFO] [stderr]   Downloaded jiff v0.2.27
[INFO] [stderr]   Downloaded hdf5-pure-rust v0.3.6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469
[INFO] running `Command { std: "docker" "start" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
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[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling lexical-util v1.0.7
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
[INFO] [stderr]    Compiling zlib-rs v0.6.3
[INFO] [stderr]    Compiling siphasher v1.0.3
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling linfa v0.7.1
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[INFO] [stderr]    Compiling noodles-core v0.20.0
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[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling env_filter v1.0.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
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[INFO] [stderr]    Compiling noodles-bam v0.90.0
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling ndarray-stats v0.5.1
[INFO] [stderr]    Compiling linfa-linalg v0.1.0
[INFO] [stderr]    Compiling argmin-math v0.4.0
[INFO] [stderr]    Compiling ndarray-rand v0.14.0
[INFO] [stderr]    Compiling nalgebra v0.32.6
[INFO] [stderr]    Compiling linfa-nn v0.7.2
[INFO] [stderr]    Compiling linfa-kernel v0.7.1
[INFO] [stderr]    Compiling linfa-reduction v0.7.1
[INFO] [stderr]    Compiling argmin v0.10.0
[INFO] [stderr]    Compiling statrs v0.17.1
[INFO] [stderr]    Compiling velocyto-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.20s
[INFO] running `Command { std: "docker" "inspect" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling velocyto-rs v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 6.71s
[INFO] running `Command { std: "docker" "inspect" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/velocyto-6db490b56b9a87b0)
[INFO] [stdout] 
[INFO] [stdout] running 67 tests
[INFO] [stdout] test bam_sort::tests::e2e_matches_samtools_grouping ... ignored, requires the large real BAM fixtures in tests/; run with --ignored
[INFO] [stdout] test commands::run::tests::bcset_no_suffix_keeps_full_barcode ... ok
[INFO] [stdout] test bam_sort::tests::key_ordering_total ... ok
[INFO] [stdout] test commands::run::tests::id_generator_length ... ok
[INFO] [stdout] test commands::run::tests::id_generator_zero_length ... ok
[INFO] [stdout] test commands::run::tests::gem_grp_single_suffix_extracts_dash_suffix ... ok
[INFO] [stdout] test commands::run::tests::cb_ub_tag_flags_parse_explicit_values ... ok
[INFO] [stdout] test commands::run::tests::cellid_single_sample_keeps_legacy_format ... ok
[INFO] [stdout] test commands::run::tests::cb_tag_only_leaves_ub_tag_none ... ok
[INFO] [stdout] test commands::run::tests::gem_grp_multiple_suffixes_returns_x ... ok
[INFO] [stdout] test commands::run::tests::load_mapping_tsv_parses_two_column_tsv ... ok
[INFO] [stdout] test commands::run::tests::num_cpus_returns_at_least_one ... ok
[INFO] [stdout] test commands::run::tests::cb_ub_tag_flags_default_to_none ... ok
[INFO] [stdout] test commands::run::tests::bcset_strips_gem_group_suffix ... ok
[INFO] [stdout] test commands::run::tests::load_mapping_tsv_skips_blank_lines ... ok
[INFO] [stdout] test commands::run::tests::peek_runs_when_only_cb_tag_provided ... ok
[INFO] [stdout] test commands::run::tests::peek_skipped_when_both_tags_provided ... ok
[INFO] [stdout] test commands::run::tests::sampleid_multi_bam_uses_multi_prefix ... ok
[INFO] [stdout] test commands::run::tests::read_mem_available_mb_returns_nonzero_on_linux ... ok
[INFO] [stdout] test commands::run::tests::peek_runs_when_only_ub_tag_provided ... ok
[INFO] [stdout] test commands::run::tests::validate_loom_dtype_accepts_uint16 ... ok
[INFO] [stdout] test commands::run::tests::sampleid_onefilepercell_uses_onefilepercell_prefix ... ok
[INFO] [stdout] test commands::run::tests::sampleid_single_bam_uses_stem ... ok
[INFO] [stdout] test commands::run::tests::validate_loom_dtype_rejects_unknown ... ok
[INFO] [stdout] test commands::run::tests::validate_loom_dtype_accepts_uint32 ... ok
[INFO] [stdout] test commands::run::tests::cellid_multi_sample_folds_sample_into_id ... ok
[INFO] [stdout] test counter::tests::both_tag_overrides_are_independent ... ok
[INFO] [stdout] test commands::run::tests::peek_runs_when_no_tags_provided ... ok
[INFO] [stdout] test bam_sort::tests::empty_bam_roundtrips ... ok
[INFO] [stdout] test commands::run::tests::gem_grp_no_suffix_returns_x ... ok
[INFO] [stdout] test commands::run::tests::load_mapping_tsv_missing_file_returns_error ... ok
[INFO] [stdout] test counter::tests::cb_tag_override_is_reflected ... ok
[INFO] [stdout] test commands::run::tests::cellid_multi_sample_preserves_gem_group_suffix ... ok
[INFO] [stdout] test commands::run::tests::id_generator_charset ... ok
[INFO] [stdout] test bam_sort::tests::sorts_small_bam_contiguous_by_cb ... ok
[INFO] [stdout] test bam_sort::tests::spills_and_merges_when_budget_tiny ... ok
[INFO] [stdout] test counter::tests::exincounter_default_cb_tag_is_cb ... ok
[INFO] [stdout] test counter::tests::ub_tag_override_is_reflected ... ok
[INFO] [stdout] test counter::tests::exincounter_default_ub_tag_is_ub ... ok
[INFO] [stdout] test estimation::tests::test_clusters_stats ... ok
[INFO] [stdout] test estimation::tests::test_fit1_slope_basic ... ok
[INFO] [stdout] test indexes::tests::test_transcripts_index_basic ... ok
[INFO] [stdout] test neighbors::tests::test_balance_knn_loop_basic ... ok
[INFO] [stdout] test neighbors::tests::test_balance_knn_loop_maxl_respected ... ok
[INFO] [stdout] test indexes::tests::test_feature_index_scan_not_terminated ... ok
[INFO] [stdout] test neighbors::tests::test_convolve_averaging_weights ... ok
[INFO] [stdout] test estimation::tests::test_fit1_slope_zero_x ... ok
[INFO] [stdout] test estimation::tests::test_fit1_slope_zero_y ... ok
[INFO] [stdout] test estimation::tests::test_fit_slope_matrix ... ok
[INFO] [stdout] test utils::tests::test_ixs_thatsort_a2b_basic ... ok
[INFO] [stdout] test neighbors::tests::test_convolve_identity_weights ... ok
[INFO] [stdout] test utils::tests::test_ixs_thatsort_a2b_duplicates ... ok
[INFO] [stdout] test estimation::tests::test_fit1_slope_offset_ols ... ok
[INFO] [stdout] test indexes::tests::test_feature_index_find_overlapping_ivls_empty ... ok
[INFO] [stdout] test indexes::tests::test_feature_index_has_ivls_enclosing ... ok
[INFO] [stdout] test serialization::tests::u32_1d_roundtrips ... ok
[INFO] [stdout] test estimation::tests::test_col_delta_cor_estimation_wrapper ... ok
[INFO] [stdout] test utils::tests::test_ixs_thatsort_a2b_identity ... ok
[INFO] [stdout] test utils::tests::test_ixs_thatsort_a2b_reverse ... ok
[INFO] [stdout] test serialization::tests::u32_2d_layer_roundtrips_values_above_u16_max ... ok
[INFO] [stdout] test speedboosted::tests::test_col_delta_cor_sqrt ... ok
[INFO] [stdout] test speedboosted::tests::test_col_delta_cor_partial_basic ... ok
[INFO] [stdout] test speedboosted::tests::test_col_delta_cor_basic ... ok
[INFO] [stdout] test speedboosted::tests::test_col_delta_cor_log10 ... ok
[INFO] [stdout] test neighbors::tests::test_connectivity_to_weights_rows ... ok
[INFO] [stdout] test bam_sort::tests::records_missing_cb_form_trailing_group ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/velocyto_rs-3b094d179e3a4921)
[INFO] [stdout] test counter::tests::dump_anndata_roundtrip ... ok
[INFO] [stderr]    Doc-tests velocyto
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 66 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469", kill_on_drop: false }`
[INFO] [stdout] 1a2feb5848608630d312ce25e4c44d048a7dfab5fdba6632d1fdb86581fd0469
