[INFO] fetching crate deepbiop-fq 0.1.17...
[INFO] testing deepbiop-fq-0.1.17 against 1.99.0-beta.8 for beta-1.100-2
[INFO] extracting crate deepbiop-fq 0.1.17 into /workspace/builds/worker-6-tc1/source
[INFO] started tweaking crates.io crate deepbiop-fq 0.1.17
[INFO] finished tweaking crates.io crate deepbiop-fq 0.1.17
[INFO] tweaked toml for crates.io crate deepbiop-fq 0.1.17 written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-fq 0.1.17 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-fq 0.1.17 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rand_distr v0.6.0
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[INFO] [stderr]   Downloaded textwrap v0.16.4
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[INFO] [stderr]   Downloaded zip v6.0.0
[INFO] [stderr]   Downloaded pest_meta v2.9.1
[INFO] [stderr]   Downloaded deepbiop-core v0.1.17
[INFO] [stderr]   Downloaded pest v2.9.1
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[INFO] [stderr]   Downloaded icu_segmenter v2.3.0
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146
[INFO] running `Command { std: "docker" "start" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]    Compiling deepbiop-core v0.1.17
[INFO] [stderr]    Compiling deepbiop-utils v0.1.17
[INFO] [stderr]    Compiling deepbiop-fq v0.1.17 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 44s
[INFO] running `Command { std: "docker" "inspect" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-integer v0.1.47
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[INFO] [stderr]    Compiling derefable v0.1.0
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[INFO] [stderr]    Compiling arrow-select v60.0.0
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling arrow-ord v60.0.0
[INFO] [stderr]    Compiling arrow-ipc v60.0.0
[INFO] [stderr]    Compiling arrow-string v60.0.0
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[INFO] [stderr]    Compiling arrow-cast v60.0.0
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling arrow-json v60.0.0
[INFO] [stderr]    Compiling arrow-csv v60.0.0
[INFO] [stderr]    Compiling bio v4.0.1
[INFO] [stderr]    Compiling arrow v60.0.0
[INFO] [stderr]    Compiling deepbiop-core v0.1.17
[INFO] [stderr]    Compiling deepbiop-utils v0.1.17
[INFO] [stderr]    Compiling deepbiop-fq v0.1.17 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `super::*`
[INFO] [stdout]    --> src/encode/parquet.rs:228:9
[INFO] [stdout]     |
[INFO] [stdout] 228 |     use super::*;
[INFO] [stdout]     |         ^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 29s
[INFO] running `Command { std: "docker" "inspect" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `super::*`
[INFO] [stderr]    --> src/encode/parquet.rs:228:9
[INFO] [stderr]     |
[INFO] [stderr] 228 |     use super::*;
[INFO] [stderr]     |         ^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `deepbiop-fq` (lib test) generated 1 warning (run `cargo fix --lib -p deepbiop-fq --tests` to apply 1 suggestion)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.45s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/deepbiop_fq-d87b37568870ecdd)
[INFO] [stdout] 
[INFO] [stdout] running 102 tests
[INFO] [stdout] test augment::mutator::tests::test_builder ... ok
[INFO] [stdout] test augment::mutator::tests::test_empty_sequence ... ok
[INFO] [stdout] test augment::mutator::tests::test_reproducible_mutations ... ok
[INFO] [stdout] test augment::mutator::tests::test_custom_alphabet ... ok
[INFO] [stdout] test augment::mutator::tests::test_high_mutation_rate ... ok
[INFO] [stdout] test augment::mutator::tests::test_mutations_change_bases ... ok
[INFO] [stdout] test augment::mutator::tests::test_rna_mode ... ok
[INFO] [stdout] test augment::quality::tests::test_builder ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_empty_sequence ... ok
[INFO] [stdout] test augment::quality::tests::test_high_quality ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_reverse_complement_sequence ... ok
[INFO] [stdout] test augment::quality::tests::test_degrading_quality ... ok
[INFO] [stdout] test augment::quality::tests::test_reproducibility ... ok
[INFO] [stdout] test augment::quality::tests::test_phred_conversion ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_ambiguity_codes ... ok
[INFO] [stdout] test augment::sampler::tests::test_empty_sequence ... ok
[INFO] [stdout] test augment::sampler::tests::test_builder ... ok
[INFO] [stdout] test augment::sampler::tests::test_exact_length_sequence ... ok
[INFO] [stdout] test augment::sampler::tests::test_different_seeds ... ok
[INFO] [stdout] test augment::sampler::tests::test_random_sampling ... ok
[INFO] [stdout] test augment::sampler::tests::test_reproducible_sampling ... ok
[INFO] [stdout] test augment::sampler::tests::test_start_sampling ... ok
[INFO] [stdout] test augment::mutator::tests::test_invalid_mutation_rate ... ok
[INFO] [stdout] test augment::quality::tests::test_uniform_quality ... ok
[INFO] [stdout] test augment::sampler::tests::test_short_sequence ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_dna ... ok
[INFO] [stdout] test augment::sampler::tests::test_center_sampling ... ok
[INFO] [stdout] test augment::sampler::tests::test_end_sampling ... ok
[INFO] [stdout] test augment::sampler::tests::test_multiple_samples ... ok
[INFO] [stdout] test augment::mutator::tests::test_zero_mutation_rate ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_lowercase ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_empty_sequence ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_rna_mode ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_simple_reverse_complement ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_protein ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_ambiguous_mask ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_empty_batch ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_ambiguous_random_reproducible ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_dna ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_lowercase ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_protein ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_ambiguous_random_different_seeds ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_rna ... ok
[INFO] [stdout] test dataset::tests::test_fastq_stream_iterator_open_reads_records ... ok
[INFO] [stdout] test encode::onehot::tests::test_validate_batch ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_rna ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_ambiguous_random ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_ambiguous_skip ... ok
[INFO] [stdout] test encode::onehot::tests::test_validate_sequence_with_ambiguous ... ok
[INFO] [stdout] test encode::onehot::tests::test_validate_sequence_empty ... ok
[INFO] [stdout] test encode::traits::tests::test_parse_target_from_id ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_lowercase ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_unknown_bases ... ok
[INFO] [stdout] test encode::onehot::tests::test_validate_sequence_clean ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_batch ... ok
[INFO] [stdout] test augment::mutator::tests::test_batch_reproducibility ... ok
[INFO] [stdout] test augment::reverse_complement::tests::test_batch_processing ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_builder ... ok
[INFO] [stdout] test encode::onehot::tests::test_onehot_encode_batch ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_is_duplicate ... ok
[INFO] [stdout] test augment::mutator::tests::test_batch_processing ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_no_duplicates ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_quality_ignored ... ok
[INFO] [stdout] test filter::length::tests::test_filter_with_reason ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_exact_duplicates ... ok
[INFO] [stdout] test filter::length::tests::test_getters ... ok
[INFO] [stdout] test filter::length::tests::test_builder ... ok
[INFO] [stdout] test filter::length::tests::test_length_range ... ok
[INFO] [stdout] test filter::length::tests::test_max_length_only ... ok
[INFO] [stdout] test filter::quality::tests::test_getters ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_filter_with_reason ... ok
[INFO] [stdout] test filter::length::tests::test_min_length_only ... ok
[INFO] [stdout] test filter::quality::tests::test_calculate_min_base_quality ... ok
[INFO] [stdout] test filter::quality::tests::test_combined_filters ... ok
[INFO] [stdout] test filter::length::tests::test_no_filter ... ok
[INFO] [stdout] test filter::quality::tests::test_builder ... ok
[INFO] [stdout] test filter::subsample::tests::test_every_nth ... ok
[INFO] [stdout] test filter::deduplicate::tests::test_clear ... ok
[INFO] [stdout] test filter::subsample::tests::test_filter_with_reason ... ok
[INFO] [stdout] test filter::subsample::tests::test_no_strategy ... ok
[INFO] [stdout] test filter::subsample::tests::test_reset ... ok
[INFO] [stdout] test filter::subsample::tests::test_random_fraction_approximately_correct ... ok
[INFO] [stdout] test filter::tests::test_filter_trait ... ok
[INFO] [stdout] test filter::subsample::tests::test_random_fraction_with_seed ... ok
[INFO] [stdout] test filter::quality::tests::test_calculate_mean_quality ... ok
[INFO] [stdout] test filter::quality::tests::test_filter_with_reason ... ok
[INFO] [stdout] test io::tests::test_write_fq_with_file_path ... ok
[INFO] [stdout] test filter::quality::tests::test_base_quality_filter ... ok
[INFO] [stdout] test io::tests::test_read_records ... ok
[INFO] [stdout] test filter::quality::tests::test_mean_quality_filter ... ok
[INFO] [stdout] test utils::tests::test_vertorize_target_valid ... ok
[INFO] [stdout] test io::tests::test_write_fq_parallel ... ok
[INFO] [stdout] test streaming::tests::test_shuffle_buffer ... ok
[INFO] [stdout] test filter::subsample::tests::test_first_n ... ok
[INFO] [stdout] test filter::subsample::tests::test_builder ... ok
[INFO] [stdout] test predicts::tests::test_load_predict ... ok
[INFO] [stdout] test augment::sampler::tests::test_zero_length - should panic ... ok
[INFO] [stdout] test dataset::tests::test_fastq_stream_iterator_open_missing_file_returns_err ... ok
[INFO] [stdout] test encode::integer::tests::test_integer_encode_invalid_char ... ok
[INFO] [stdout] test filter::subsample::tests::test_invalid_every_nth - should panic ... ok
[INFO] [stdout] test utils::tests::test_vertorize_target_invalid ... ok
[INFO] [stdout] test filter::subsample::tests::test_invalid_fraction - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 102 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.38s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests deepbiop_fq
[INFO] [stdout] 
[INFO] [stdout] running 16 tests
[INFO] [stdout] test src/filter/quality.rs - filter::quality::QualityFilter (line 11) - compile ... ok
[INFO] [stdout] test src/filter/subsample.rs - filter::subsample::Subsampler (line 18) - compile ... ok
[INFO] [stdout] test src/io.rs - io::fastq_to_fasta (line 194) - compile ... ok
[INFO] [stdout] test src/filter/length.rs - filter::length::LengthFilter (line 11) - compile ... ok
[INFO] [stdout] test src/io.rs - io::convert_multiple_fqs_to_one_bgzip_fq_streaming (line 148) - compile ... ok
[INFO] [stdout] test src/encode/onehot.rs - encode::onehot::OneHotEncoder (line 37) - compile ... ok
[INFO] [stdout] test src/filter/deduplicate.rs - filter::deduplicate::Deduplicator (line 16) - compile ... ok
[INFO] [stdout] test src/io.rs - io::convert_multiple_fqs_to_one_bgzip_fq (line 103) - compile ... ok
[INFO] [stdout] test src/augment/mod.rs - augment (line 11) - compile ... ok
[INFO] [stdout] test src/encode/integer.rs - encode::integer::IntegerEncoder (line 23) - compile ... ok
[INFO] [stdout] test src/augment/mutator.rs - augment::mutator::Mutator::apply_batch (line 190) ... FAILED
[INFO] [stdout] test src/augment/reverse_complement.rs - augment::reverse_complement::ReverseComplement (line 13) ... FAILED
[INFO] [stdout] test src/augment/mutator.rs - augment::mutator::Mutator (line 16) has been running for over 60 seconds
[INFO] [stdout] test src/augment/quality.rs - augment::quality::QualitySimulator (line 81) has been running for over 60 seconds
[INFO] [stdout] test src/augment/reverse_complement.rs - augment::reverse_complement::ReverseComplement::apply_batch (line 120) has been running for over 60 seconds
[INFO] [stdout] test src/augment/sampler.rs - augment::sampler::Sampler (line 15) has been running for over 60 seconds
[INFO] [stdout] test src/augment/sampler.rs - augment::sampler::Sampler (line 15) ... ok
[INFO] [stdout] test src/augment/mutator.rs - augment::mutator::Mutator (line 16) ... ok
[INFO] [stdout] test src/augment/quality.rs - augment::quality::QualitySimulator (line 81) ... ok
[INFO] [stdout] test src/augment/reverse_complement.rs - augment::reverse_complement::ReverseComplement::apply_batch (line 120) ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/augment/mutator.rs - augment::mutator::Mutator::apply_batch (line 190) stdout ----
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/tmp/rustdoctestuyzr0y/rustcrUuJ8p/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libdeepbiop_fq-b7a317794003238c,libwalkdir-7cc6f300a6f0bf06,libsame_file-ff49545450c0b63c,libcandle_core-d0280726b53d4369,libnum_cpus-4f04293a826bf90a,libmemmap2-d44c8869f8ec31cb,libzip-6d2de6d06e1a056a,libtyped_path-d4bef469917403d3,liblibm-24398d5f7d3c709c,libsafetensors-c64df607f9a7a7f4,libtokenizers-e0728a9a629cb8f4,libesaxx_rs-3a779e970ad16977,libunicode_normalization_alignments-343249b118032f3e,libsmallvec-9c1e0f6a5f393f83,libspm_precompiled-9a3e66658acd0a2a,libbase64-42295ac2e0e134a3,libunicode_segmentation-7adb7faea6d97d51,libnom-b614b9e0a8ccc5e5,libunicode_categories-6f2b7f5ace1e9985,libdary_heap-818220d79cb51559,libcompact_str-83c31864b85eb09b,libstatic_assertions-f0217ecdd817a834,libcastaway-cc9c9278369cb66d,libmonostate-2fbc4126cb964016,libmacro_rules_attribute-3a2b72ff017cb6ce,librayon_cond-860d19adddda54e4,libitertools-b0ffe90762026fde,libonig-b3f3f412cc293bb0,libonig_sys-e44602dbb3280cda,libgemm-8831b78d7f0dc5d6,libgemm_c32-f5050a8049462e68,libgemm_c64-9556e573b381c9d5,libgemm_f64-10b358393a831194,libgemm_f16-da22792de8016cc9,libgemm_f32-cb5eef3c66c85de8,libgemm_common-d81731c86b5317b7,libpulp-859baf5c6ff74ddf,libdyn_stack-62b43ca2023bc676,libraw_cpuid-725ac214e0e430dc,libfloat8-2d25518e0fd57657,libdeepbiop_utils-75b337beca65f05b,libtextwrap-713ca818f46c97d6,libunicode_width-c0be3735b741df1b,libsmawk-25c31c38b4a5fc1e,libicu_segmenter-27d6fac133c53c54,libicu_locale_fallback-f1ec1da84d0c6b9b,libicu_locale_fallback_data-e2393750e9eae11d,libicu_segmenter_data-0ba014bb01002e64,libicu_collections-cecd4b0e70147d9d,libutf8_iter-51566bbad89f3a68,libpotential_utf-df2b2ab8a0cf932c,libicu_provider-9e116b9945f8a346,libicu_locale_core-863bf1004d302c18,libtinystr-824da407130233c6,liblitemap-ea75fc5d31bb7d97,libwriteable-07999a429b64476e,libzerovec-c4dc1288c52d2948,libyoke-302ad89574ae11d3,libstable_deref_trait-8f5d1ea34607785b,libzerofrom-e3c24adf60271226,libzerotrie-32da4bba8b0407b5,libndarray_npy-363853491291769d,libzip-9fb112df6652a365,libzopfli-d369f69528417a62,libsimd_adler32-8a9b3dd58fcce0fb,libbumpalo-09592ac400046911,libcrc32fast-ab0cdfccf84a6541,libbyteorder-8f59b6d1bfdaa844,libpy_literal-5f6ff04f23564a44,libpest-e999c6e2ae06ea17,libucd_trie-64e35acb102f3b4d,libnum_bigint-2e30bd266e698526,liblexical-d021c08c96c69a99,libcolored-7e1577056734bcb3,libtempfile-e78ce9f467eb18a3,libfastrand-bab015aa83fcde07,librustix-1221baed404de2e3,liblinux_raw_sys-0b6cde911e9a3109,liblog-22b5be7f6ba2d64a,libarrow-d382bda2d4f559d8,libarrow_row-ef5d9485f13411fc,libarrow_json-38b20128b2e8a3db,libsimdutf8-0b1b63a7b11d4058,libserde_json-5e1f451d80127c14,libzmij-2ca2f302097868c6,libarrow_ipc-a033d87e4aff8539,libflatbuffers-50832e7450f907a5,libarrow_csv-707715760143fdc3,libcsv-6bfb05e24cb40a99,libitoa-5de11b3b23bfe572,libcsv_core-b0fda6c0ccde7103,libarrow_string-b573750e030f3912,libregex-82e681dd228f6998,libarrow_cast-fbb1841bac4970f5,libatoi-e0e33bf2a6f1a011,libryu-1f4f40e4352371e5,libbase64-cd0e3010b971e43f,libarrow_arith-6bd3a36d4af6fa20,libarrow_ord-84cdfdc3cfe9d11a,libarrow_select-412adadaa35a3c34,libarrow_cmp-8fd23a1c6dd1f8a5,libarrow_array-01823b12596d5e3b,libchrono-255fb964aa158e7f,libiana_time_zone-bcd81aefedc374a6,libarrow_data-e95b2c71ae06f9ac,libarrow_schema-fa2623860318fbaf,libarrow_buffer-6db25f831e3fadae,libhalf-581fe41708713e7f,librand_distr-7fc3581cee906c4f,librand-79390579b1a5a7d7,librand_chacha-bb58da8e982c7549,libppv_lite86-d9b615e27decca9d,librand_core-81892de8c7a4d0f4,libnum_bigint-d18679ae18f59686,libdeepbiop_core-bf818c069bc238b3,libneedletail-869f6861610c8ced,libbytecount-4690dc5a500fb13e,libbuffer_redux-380663f2d866d4b5,libzstd-442a6ed71f95a59c,libzstd_safe-e954ab3f2b62d034,libzstd_sys-2700bc7ea3edd929,libliblzma-10886a6b0ea0afde,libliblzma_sys-b903affcec98adac,libflate2-97ec084500388cf4,libbzip2-32a03d911c66cb33,liblibbz2_rs_sys-e91d41ee7057ce95,libitertools-41499141e98f8d7e,libahash-cdb7ec49b7802e36,libgetrandom-e54720ffb1a13286,libonce_cell-b5bdc597ed9676b3,libzerocopy-01b8713fb47894af,libthiserror-d43772f800189f4f,libndarray-7e8301cb9e46bebc,libmatrixmultiply-17c067afaaf4c5dd,libnum_complex-51b2ae5975a4c863,libbytemuck-befd78e97fab1b16,libnum_integer-8b17c5bf52a753a9,librawpointer-10d892ea69c462d6,libserde-9b859b66bec286d8,libserde_core-7370a7595b05d50c,libnoodles-b5ef167bbd7e1d87,libnoodles_vcf-6003f0a5d0a16afe,libnoodles_tabix-05528cce91c3b1d4,libnoodles_gff-3c8d7ce9b2f9c03c,libpercent_encoding-fa055ecaa1e57cfa,libnoodles_fastq-b444a74f02839a34,libnoodles_fasta-2ef6408ef253fd7b,libnoodles_bam-85cc2789d80557bb,libnoodles_sam-ede743830d104d51,libbitflags-d493ea957e921aab,liblexical_core-01af1141c816a22c,liblexical_write_float-c10b4e2ad2c9e604,liblexical_write_integer-2b5a1c3222d346aa,liblexical_parse_float-a7ce5b1bad958c68,liblexical_parse_integer-eccd82888d3f7b6c,liblexical_util-cb790f3155cc1e98,libnoodles_csi-bff6578dbf3436e4,libbit_vec-81ac9a8f4b192c6e,libnoodles_core-1c8754b99c0b36f5,libnoodles_bgzf-768ca1799ecbb825,libbytes-5f66263ae3d5daa8,libcrossbeam_channel-83afe9d595016aef,libzlib_rs-7775ada1092d2c26,libbstr-8fe6041d022f26b5,libregex_automata-bbd2538229897a2d,libaho_corasick-58b927fd10e4d4e2,libregex_syntax-801391c65a42f645,libmemchr-a932478bde794617,libindexmap-f8362b905c005e10,libequivalent-6a754676e6af62ae,libhashbrown-d7214d631586fd51,libanyhow-eeb2152985963809,librand_distr-f9601b8061bd8e16,libnum_traits-68e0d171d32a4dd9,librayon-6df10aa5b5cc12c2,librayon_core-7a0f25d355d0e40b,libcrossbeam_deque-5efa23ddfe237181,libcrossbeam_epoch-e96f732a673912e5,libcrossbeam_utils-7ff32d1cfd9997e2,libeither-c9376743e4a51115,librand-341b1b22f93afcc6,libgetrandom-4c46aa15e8d4acd9,liblibc-32464e1b8391e223,libchacha20-79781d8b723a97f9,libcpufeatures-2e8dd38066a76518,libcfg_if-5addb699396bfe5f,librand_core-8437d288e8d1265c,libderive_builder-2930127d8929b277}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustdoctestuyzr0y/rustcrUuJ8p/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/onig_sys-6c7558fd0e32744d/out" "-L" "/opt/rustwide/target/debug/build/zstd-sys-a5769ed3b942ccc7/out" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctestuyzr0y/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: collect2: fatal error: ld terminated with signal 9 [Killed]
[INFO] [stdout]           compilation terminated.
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/augment/reverse_complement.rs - augment::reverse_complement::ReverseComplement (line 13) stdout ----
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "/tmp/rustdoctesttardcX/rustc8v6qhO/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/debug/deps/{libdeepbiop_fq-b7a317794003238c,libwalkdir-7cc6f300a6f0bf06,libsame_file-ff49545450c0b63c,libcandle_core-d0280726b53d4369,libnum_cpus-4f04293a826bf90a,libmemmap2-d44c8869f8ec31cb,libzip-6d2de6d06e1a056a,libtyped_path-d4bef469917403d3,liblibm-24398d5f7d3c709c,libsafetensors-c64df607f9a7a7f4,libtokenizers-e0728a9a629cb8f4,libesaxx_rs-3a779e970ad16977,libunicode_normalization_alignments-343249b118032f3e,libsmallvec-9c1e0f6a5f393f83,libspm_precompiled-9a3e66658acd0a2a,libbase64-42295ac2e0e134a3,libunicode_segmentation-7adb7faea6d97d51,libnom-b614b9e0a8ccc5e5,libunicode_categories-6f2b7f5ace1e9985,libdary_heap-818220d79cb51559,libcompact_str-83c31864b85eb09b,libstatic_assertions-f0217ecdd817a834,libcastaway-cc9c9278369cb66d,libmonostate-2fbc4126cb964016,libmacro_rules_attribute-3a2b72ff017cb6ce,librayon_cond-860d19adddda54e4,libitertools-b0ffe90762026fde,libonig-b3f3f412cc293bb0,libonig_sys-e44602dbb3280cda,libgemm-8831b78d7f0dc5d6,libgemm_c32-f5050a8049462e68,libgemm_c64-9556e573b381c9d5,libgemm_f64-10b358393a831194,libgemm_f16-da22792de8016cc9,libgemm_f32-cb5eef3c66c85de8,libgemm_common-d81731c86b5317b7,libpulp-859baf5c6ff74ddf,libdyn_stack-62b43ca2023bc676,libraw_cpuid-725ac214e0e430dc,libfloat8-2d25518e0fd57657,libdeepbiop_utils-75b337beca65f05b,libtextwrap-713ca818f46c97d6,libunicode_width-c0be3735b741df1b,libsmawk-25c31c38b4a5fc1e,libicu_segmenter-27d6fac133c53c54,libicu_locale_fallback-f1ec1da84d0c6b9b,libicu_locale_fallback_data-e2393750e9eae11d,libicu_segmenter_data-0ba014bb01002e64,libicu_collections-cecd4b0e70147d9d,libutf8_iter-51566bbad89f3a68,libpotential_utf-df2b2ab8a0cf932c,libicu_provider-9e116b9945f8a346,libicu_locale_core-863bf1004d302c18,libtinystr-824da407130233c6,liblitemap-ea75fc5d31bb7d97,libwriteable-07999a429b64476e,libzerovec-c4dc1288c52d2948,libyoke-302ad89574ae11d3,libstable_deref_trait-8f5d1ea34607785b,libzerofrom-e3c24adf60271226,libzerotrie-32da4bba8b0407b5,libndarray_npy-363853491291769d,libzip-9fb112df6652a365,libzopfli-d369f69528417a62,libsimd_adler32-8a9b3dd58fcce0fb,libbumpalo-09592ac400046911,libcrc32fast-ab0cdfccf84a6541,libbyteorder-8f59b6d1bfdaa844,libpy_literal-5f6ff04f23564a44,libpest-e999c6e2ae06ea17,libucd_trie-64e35acb102f3b4d,libnum_bigint-2e30bd266e698526,liblexical-d021c08c96c69a99,libcolored-7e1577056734bcb3,libtempfile-e78ce9f467eb18a3,libfastrand-bab015aa83fcde07,librustix-1221baed404de2e3,liblinux_raw_sys-0b6cde911e9a3109,liblog-22b5be7f6ba2d64a,libarrow-d382bda2d4f559d8,libarrow_row-ef5d9485f13411fc,libarrow_json-38b20128b2e8a3db,libsimdutf8-0b1b63a7b11d4058,libserde_json-5e1f451d80127c14,libzmij-2ca2f302097868c6,libarrow_ipc-a033d87e4aff8539,libflatbuffers-50832e7450f907a5,libarrow_csv-707715760143fdc3,libcsv-6bfb05e24cb40a99,libitoa-5de11b3b23bfe572,libcsv_core-b0fda6c0ccde7103,libarrow_string-b573750e030f3912,libregex-82e681dd228f6998,libarrow_cast-fbb1841bac4970f5,libatoi-e0e33bf2a6f1a011,libryu-1f4f40e4352371e5,libbase64-cd0e3010b971e43f,libarrow_arith-6bd3a36d4af6fa20,libarrow_ord-84cdfdc3cfe9d11a,libarrow_select-412adadaa35a3c34,libarrow_cmp-8fd23a1c6dd1f8a5,libarrow_array-01823b12596d5e3b,libchrono-255fb964aa158e7f,libiana_time_zone-bcd81aefedc374a6,libarrow_data-e95b2c71ae06f9ac,libarrow_schema-fa2623860318fbaf,libarrow_buffer-6db25f831e3fadae,libhalf-581fe41708713e7f,librand_distr-7fc3581cee906c4f,librand-79390579b1a5a7d7,librand_chacha-bb58da8e982c7549,libppv_lite86-d9b615e27decca9d,librand_core-81892de8c7a4d0f4,libnum_bigint-d18679ae18f59686,libdeepbiop_core-bf818c069bc238b3,libneedletail-869f6861610c8ced,libbytecount-4690dc5a500fb13e,libbuffer_redux-380663f2d866d4b5,libzstd-442a6ed71f95a59c,libzstd_safe-e954ab3f2b62d034,libzstd_sys-2700bc7ea3edd929,libliblzma-10886a6b0ea0afde,libliblzma_sys-b903affcec98adac,libflate2-97ec084500388cf4,libbzip2-32a03d911c66cb33,liblibbz2_rs_sys-e91d41ee7057ce95,libitertools-41499141e98f8d7e,libahash-cdb7ec49b7802e36,libgetrandom-e54720ffb1a13286,libonce_cell-b5bdc597ed9676b3,libzerocopy-01b8713fb47894af,libthiserror-d43772f800189f4f,libndarray-7e8301cb9e46bebc,libmatrixmultiply-17c067afaaf4c5dd,libnum_complex-51b2ae5975a4c863,libbytemuck-befd78e97fab1b16,libnum_integer-8b17c5bf52a753a9,librawpointer-10d892ea69c462d6,libserde-9b859b66bec286d8,libserde_core-7370a7595b05d50c,libnoodles-b5ef167bbd7e1d87,libnoodles_vcf-6003f0a5d0a16afe,libnoodles_tabix-05528cce91c3b1d4,libnoodles_gff-3c8d7ce9b2f9c03c,libpercent_encoding-fa055ecaa1e57cfa,libnoodles_fastq-b444a74f02839a34,libnoodles_fasta-2ef6408ef253fd7b,libnoodles_bam-85cc2789d80557bb,libnoodles_sam-ede743830d104d51,libbitflags-d493ea957e921aab,liblexical_core-01af1141c816a22c,liblexical_write_float-c10b4e2ad2c9e604,liblexical_write_integer-2b5a1c3222d346aa,liblexical_parse_float-a7ce5b1bad958c68,liblexical_parse_integer-eccd82888d3f7b6c,liblexical_util-cb790f3155cc1e98,libnoodles_csi-bff6578dbf3436e4,libbit_vec-81ac9a8f4b192c6e,libnoodles_core-1c8754b99c0b36f5,libnoodles_bgzf-768ca1799ecbb825,libbytes-5f66263ae3d5daa8,libcrossbeam_chan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"<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,libcfg_if-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*,liblibc-*,librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-Wl,-Bdynamic" "-llzma" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-L" "/tmp/rustdoctesttardcX/rustc8v6qhO/raw-dylibs" "-B<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/bin/gcc-ld" "-fuse-ld=lld" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/opt/rustwide/target/debug/build/onig_sys-6c7558fd0e32744d/out" "-L" "/opt/rustwide/target/debug/build/zstd-sys-a5769ed3b942ccc7/out" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/tmp/rustdoctesttardcX/rust_out" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: collect2: fatal error: ld terminated with signal 9 [Killed]
[INFO] [stdout]           compilation terminated.
[INFO] [stdout]           
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/augment/mutator.rs - augment::mutator::Mutator::apply_batch (line 190)
[INFO] [stdout]     src/augment/reverse_complement.rs - augment::reverse_complement::ReverseComplement (line 13)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 14 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 157.20s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146", kill_on_drop: false }`
[INFO] [stdout] 2129c8c04a2ababa7d9feb322e8ec6b256b5c225a5545d15c506cdf49d536146
