[INFO] cloning repository https://github.com/fg-labs/mako [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fg-labs/mako" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffg-labs%2Fmako", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffg-labs%2Fmako'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fc4106b29ff5bb8da5d6f76570a61a7147c72685 [INFO] testing fg-labs/mako against 1.99.0-beta.8 for beta-1.100-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffg-labs%2Fmako" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc1/source/.cargo/config.toml [INFO] removed /workspace/builds/worker-6-tc1/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/fg-labs/mako [INFO] finished tweaking git repo https://github.com/fg-labs/mako [INFO] tweaked toml for git repo https://github.com/fg-labs/mako written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/fg-labs/mako on toolchain 1.99.0-beta.8 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/fg-labs/mako already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-sam v0.82.0 [INFO] [stderr] Downloaded read-structure v0.2.0 [INFO] [stderr] Downloaded noodles-core v0.19.0 [INFO] [stderr] Downloaded mimalloc v0.1.52 [INFO] [stderr] Downloaded noodles-core v0.20.0 [INFO] [stderr] Downloaded noodles v0.106.0 [INFO] [stderr] Downloaded noodles-tabix v0.66.0 [INFO] [stderr] Downloaded noodles v0.115.0 [INFO] [stderr] Downloaded libdeflater v1.26.0 [INFO] [stderr] Downloaded noodles-csi v0.54.0 [INFO] [stderr] Downloaded noodles-bgzf v0.46.0 [INFO] [stderr] Downloaded fgumi-dna v0.7.0 [INFO] [stderr] Downloaded noodles-fasta v0.66.0 [INFO] [stderr] Downloaded fgumi-tag v0.7.0 [INFO] [stderr] Downloaded serde-aux v4.7.0 [INFO] [stderr] Downloaded noodles-bgzf v0.51.0 [INFO] [stderr] Downloaded noodles-csi v0.60.0 [INFO] [stderr] Downloaded bit-vec v0.10.1 [INFO] [stderr] Downloaded bytesize v2.7.0 [INFO] [stderr] Downloaded fgumi-simd-fastq v0.7.0 [INFO] [stderr] Downloaded fgoxide v0.6.0 [INFO] [stderr] Downloaded matrixmultiply v0.3.11 [INFO] [stderr] Downloaded fgumi-bgzf v0.7.0 [INFO] [stderr] Downloaded enum_dispatch v0.3.13 [INFO] [stderr] Downloaded cargo-lock v11.1.0 [INFO] [stderr] Downloaded simba v0.9.1 [INFO] [stderr] Downloaded borsh-derive v1.8.0 [INFO] [stderr] Downloaded fs4 v1.1.0 [INFO] [stderr] Downloaded bgzf v0.5.0 [INFO] [stderr] Downloaded safe_arch v0.7.4 [INFO] [stderr] Downloaded fgumi-bam-io v0.7.0 [INFO] [stderr] Downloaded fgumi-metrics v0.7.0 [INFO] [stderr] Downloaded noodles-bam v0.86.0 [INFO] [stderr] Downloaded wide v0.7.33 [INFO] [stderr] Downloaded borsh v1.8.0 [INFO] [stderr] Downloaded noodles-bam v0.94.0 [INFO] [stderr] Downloaded safe_arch v1.2.0 [INFO] [stderr] Downloaded noodles-vcf v0.92.0 [INFO] [stderr] Downloaded noodles-sam v0.89.0 [INFO] [stderr] Downloaded fgumi-raw-bam v0.7.0 [INFO] [stderr] Downloaded libdeflate-sys v1.26.0 [INFO] [stderr] Downloaded wide v1.6.1 [INFO] [stderr] Downloaded sysinfo v0.38.4 [INFO] [stderr] Downloaded git2 v0.21.0 [INFO] [stderr] Downloaded fgumi-consensus v0.7.0 [INFO] [stderr] Downloaded nalgebra v0.33.3 [INFO] [stderr] Downloaded libmimalloc-sys v0.1.49 [INFO] [stderr] Downloaded fgumi-sort v0.7.0 [INFO] [stderr] Downloaded libgit2-sys v0.18.8+1.9.7 [INFO] [stderr] Downloaded fgumi-sam v0.7.0 [INFO] [stderr] Downloaded fgumi-umi v0.7.0 [INFO] [stderr] Downloaded fgumi v0.7.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72 [INFO] running `Command { std: "docker" "start" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.107 [INFO] [stderr] Compiling quote v1.0.47 [INFO] [stderr] Compiling libc v0.2.189 [INFO] [stderr] Compiling find-msvc-tools v0.1.11 [INFO] [stderr] Compiling shlex v2.0.1 [INFO] [stderr] Compiling memchr v2.8.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.22 [INFO] [stderr] Compiling autocfg v1.5.1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.20 [INFO] [stderr] Compiling crossbeam-deque v0.8.7 [INFO] [stderr] Compiling regex-syntax v0.8.11 [INFO] [stderr] Compiling pkg-config v0.3.34 [INFO] [stderr] Compiling stable_deref_trait v1.2.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling syn v3.0.4 [INFO] [stderr] Compiling syn v2.0.119 [INFO] [stderr] Compiling aho-corasick v1.1.5 [INFO] [stderr] Compiling either v1.18.0 [INFO] [stderr] Compiling zlib-rs v0.6.7 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling jobserver v0.1.35 [INFO] [stderr] Compiling cc v1.4.4 [INFO] [stderr] Compiling bytes v1.12.1 [INFO] [stderr] Compiling regex-automata v0.4.18 [INFO] [stderr] Compiling rayon v1.12.0 [INFO] [stderr] Compiling libdeflate-sys v1.26.0 [INFO] [stderr] Compiling foldhash v0.2.0 [INFO] [stderr] Compiling hashbrown v0.17.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.16 [INFO] [stderr] Compiling lexical-util v1.0.7 [INFO] [stderr] Compiling bitflags v2.13.1 [INFO] [stderr] Compiling indexmap v2.14.0 [INFO] [stderr] Compiling bit-vec v0.10.1 [INFO] [stderr] Compiling serde_core v1.0.229 [INFO] [stderr] Compiling litemap v0.8.3 [INFO] [stderr] Compiling writeable v0.6.4 [INFO] [stderr] Compiling lexical-write-integer v1.0.6 [INFO] [stderr] Compiling lexical-parse-integer v1.0.6 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling icu_properties_data v2.3.0 [INFO] [stderr] Compiling icu_normalizer_data v2.3.0 [INFO] [stderr] Compiling zerocopy v0.8.56 [INFO] [stderr] Compiling utf8_iter v1.0.4 [INFO] [stderr] Compiling bstr v1.13.1 [INFO] [stderr] Compiling lexical-write-float v1.0.6 [INFO] [stderr] Compiling lexical-parse-float v1.0.6 [INFO] [stderr] Compiling libz-sys v1.1.29 [INFO] [stderr] Compiling noodles-core v0.20.0 [INFO] [stderr] Compiling zerovec-derive v0.11.6 [INFO] [stderr] Compiling displaydoc v0.2.7 [INFO] [stderr] Compiling serde_derive v1.0.229 [INFO] [stderr] Compiling bytemuck_derive v1.12.0 [INFO] [stderr] Compiling lexical-core v1.0.6 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Compiling bytemuck v1.25.2 [INFO] [stderr] Compiling serde v1.0.229 [INFO] [stderr] Compiling smallvec v1.15.2 [INFO] [stderr] Compiling anyhow v1.0.104 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling zerofrom v0.1.8 [INFO] [stderr] Compiling crc32fast v1.5.1 [INFO] [stderr] Compiling yoke v0.8.3 [INFO] [stderr] Compiling getrandom v0.4.3 [INFO] [stderr] Compiling libdeflater v1.26.0 [INFO] [stderr] Compiling noodles-bgzf v0.51.0 [INFO] [stderr] Compiling rand_core v0.10.1 [INFO] [stderr] Compiling zerovec v0.11.8 [INFO] [stderr] Compiling zerotrie v0.2.5 [INFO] [stderr] Compiling noodles-csi v0.60.0 [INFO] [stderr] Compiling noodles-fasta v0.66.0 [INFO] [stderr] Compiling libgit2-sys v0.18.8+1.9.7 [INFO] [stderr] Compiling percent-encoding v2.3.2 [INFO] [stderr] Compiling tinystr v0.8.4 [INFO] [stderr] Compiling potential_utf v0.1.6 [INFO] [stderr] Compiling icu_collections v2.3.0 [INFO] [stderr] Compiling icu_locale_core v2.3.0 [INFO] [stderr] Compiling noodles-tabix v0.66.0 [INFO] [stderr] Compiling noodles-sam v0.89.0 [INFO] [stderr] Compiling noodles-vcf v0.92.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling foldhash v0.1.5 [INFO] [stderr] Compiling icu_provider v2.3.1 [INFO] [stderr] Compiling winnow v1.0.4 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling icu_normalizer v2.3.0 [INFO] [stderr] Compiling icu_properties v2.3.0 [INFO] [stderr] Compiling toml_parser v1.1.3+spec-1.1.0 [INFO] [stderr] Compiling hashbrown v0.15.5 [INFO] [stderr] Compiling form_urlencoded v1.2.2 [INFO] [stderr] Compiling noodles-bam v0.94.0 [INFO] [stderr] Compiling safe_arch v1.2.0 [INFO] [stderr] Compiling toml_datetime v1.1.1+spec-1.1.0 [INFO] [stderr] Compiling idna_adapter v1.2.2 [INFO] [stderr] Compiling idna v1.1.0 [INFO] [stderr] Compiling serde_spanned v1.1.1 [INFO] [stderr] Compiling toml_writer v1.1.2+spec-1.1.0 [INFO] [stderr] Compiling linux-raw-sys v0.12.1 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling zmij v1.0.23 [INFO] [stderr] Compiling noodles v0.115.0 [INFO] [stderr] Compiling fixedbitset v0.5.7 [INFO] [stderr] Compiling simd-adler32 v0.3.10 [INFO] [stderr] Compiling fgumi-dna v0.7.0 [INFO] [stderr] Compiling petgraph v0.8.3 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling fgumi-tag v0.7.0 [INFO] [stderr] Compiling url v2.5.8 [INFO] [stderr] Compiling toml v1.1.4+spec-1.1.0 [INFO] [stderr] Compiling wide v1.6.1 [INFO] [stderr] Compiling semver v1.0.28 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling serde_json v1.0.151 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Compiling log v0.4.34 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling ppv-lite86 v0.2.21 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling libmimalloc-sys v0.1.49 [INFO] [stderr] Compiling cargo-lock v11.1.0 [INFO] [stderr] Compiling fastrand v2.5.0 [INFO] [stderr] Compiling cfg_aliases v0.2.2 [INFO] [stderr] Compiling chrono v0.4.45 [INFO] [stderr] Compiling tempfile v3.27.0 [INFO] [stderr] Compiling nix v0.31.3 [INFO] [stderr] Compiling clap_builder v4.6.6 [INFO] [stderr] Compiling clap_derive v4.6.4 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling safe_arch v0.7.4 [INFO] [stderr] Compiling approx v0.5.1 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling matrixmultiply v0.3.11 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling rustversion v1.0.23 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling bgzf v0.5.0 [INFO] [stderr] Compiling wide v0.7.33 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling rand v0.8.8 [INFO] [stderr] Compiling clap v4.6.6 [INFO] [stderr] Compiling serde-aux v4.7.0 [INFO] [stderr] Compiling num-complex v0.4.6 [INFO] [stderr] Compiling num-integer v0.1.47 [INFO] [stderr] Compiling cpufeatures v0.3.0 [INFO] [stderr] Compiling thiserror v2.0.20 [INFO] [stderr] Compiling cty v0.2.2 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling num-rational v0.4.2 [INFO] [stderr] Compiling chacha20 v0.10.1 [INFO] [stderr] Compiling simba v0.9.1 [INFO] [stderr] Compiling rand_distr v0.4.3 [INFO] [stderr] Compiling fgoxide v0.6.0 [INFO] [stderr] Compiling fgumi-raw-bam v0.7.0 [INFO] [stderr] Compiling fgumi-bgzf v0.7.0 [INFO] [stderr] Compiling thiserror-impl v2.0.20 [INFO] [stderr] Compiling regex v1.13.1 [INFO] [stderr] Compiling typenum v1.20.1 [INFO] [stderr] Compiling jiff-core v0.1.0 [INFO] [stderr] Compiling fgumi-bam-io v0.7.0 [INFO] [stderr] Compiling env_filter v2.0.0 [INFO] [stderr] Compiling fgumi-sam v0.7.0 [INFO] [stderr] Compiling fgumi-metrics v0.7.0 [INFO] [stderr] Compiling jiff v0.2.35 [INFO] [stderr] Compiling strum_macros v0.24.3 [INFO] [stderr] Compiling nalgebra v0.33.3 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling rand v0.10.2 [INFO] [stderr] Compiling fs4 v1.1.0 [INFO] [stderr] Compiling crossbeam-queue v0.3.13 [INFO] [stderr] Compiling strum v0.24.1 [INFO] [stderr] Compiling bytesize v2.7.0 [INFO] [stderr] Compiling enum_dispatch v0.3.13 [INFO] [stderr] Compiling read-structure v0.2.0 [INFO] [stderr] Compiling rand_distr v0.6.0 [INFO] [stderr] Compiling fgumi-consensus v0.7.0 [INFO] [stderr] Compiling mimalloc v0.1.52 [INFO] [stderr] Compiling fgumi-umi v0.7.0 [INFO] [stderr] Compiling lru v0.18.2 [INFO] [stderr] Compiling sysinfo v0.38.4 [INFO] [stderr] Compiling num_cpus v1.17.0 [INFO] [stderr] Compiling env_logger v0.11.11 [INFO] [stderr] Compiling itertools v0.14.0 [INFO] [stderr] Compiling fgumi-simd-fastq v0.7.0 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling zstd v0.13.3 [INFO] [stderr] Compiling fgumi-sort v0.7.0 [INFO] [stderr] Compiling statrs v0.18.0 [INFO] [stderr] Compiling git2 v0.21.0 [INFO] [stderr] Compiling built v0.8.1 [INFO] [stderr] Compiling fgumi v0.7.0 [INFO] [stderr] Compiling fg-mako v0.1.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 22s [INFO] running `Command { std: "docker" "inspect" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling regex-syntax v0.8.11 [INFO] [stderr] Compiling noodles-bgzf v0.46.0 [INFO] [stderr] Compiling bit-vec v0.8.0 [INFO] [stderr] Compiling predicates-core v1.0.10 [INFO] [stderr] Compiling float-cmp v0.10.0 [INFO] [stderr] Compiling difflib v0.4.0 [INFO] [stderr] Compiling termtree v0.5.1 [INFO] [stderr] Compiling normalize-line-endings v0.3.0 [INFO] [stderr] Compiling assert_cmd v2.2.2 [INFO] [stderr] Compiling wait-timeout v0.2.1 [INFO] [stderr] Compiling predicates-tree v1.0.13 [INFO] [stderr] Compiling regex-automata v0.4.18 [INFO] [stderr] Compiling bstr v1.13.1 [INFO] [stderr] Compiling regex v1.13.1 [INFO] [stderr] Compiling env_filter v2.0.0 [INFO] [stderr] Compiling predicates v3.1.4 [INFO] [stderr] Compiling env_logger v0.11.11 [INFO] [stderr] Compiling noodles-core v0.20.0 [INFO] [stderr] Compiling noodles-core v0.19.0 [INFO] [stderr] Compiling noodles-csi v0.54.0 [INFO] [stderr] Compiling noodles-csi v0.60.0 [INFO] [stderr] Compiling noodles-fasta v0.66.0 [INFO] [stderr] Compiling noodles-sam v0.82.0 [INFO] [stderr] Compiling noodles-tabix v0.66.0 [INFO] [stderr] Compiling noodles-sam v0.89.0 [INFO] [stderr] Compiling noodles-vcf v0.92.0 [INFO] [stderr] Compiling noodles-bam v0.94.0 [INFO] [stderr] Compiling noodles-bam v0.86.0 [INFO] [stderr] Compiling noodles v0.115.0 [INFO] [stderr] Compiling fgumi-tag v0.7.0 [INFO] [stderr] Compiling fgumi-raw-bam v0.7.0 [INFO] [stderr] Compiling noodles v0.106.0 [INFO] [stderr] Compiling fgumi-sam v0.7.0 [INFO] [stderr] Compiling fgumi-metrics v0.7.0 [INFO] [stderr] Compiling fgumi-bam-io v0.7.0 [INFO] [stderr] Compiling fgumi-sort v0.7.0 [INFO] [stderr] Compiling fgumi-consensus v0.7.0 [INFO] [stderr] Compiling fgumi v0.7.0 [INFO] [stderr] Compiling fg-mako v0.1.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 1m 19s [INFO] running `Command { std: "docker" "inspect" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.46s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/debug/deps/mako-d2a2584f4752dfee) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/cli.rs (/opt/rustwide/target/debug/deps/cli-273321a013d74525) [INFO] [stdout] [INFO] [stdout] running 13 tests [INFO] [stdout] test coordinate_sort_orders_records_by_position ... ok [INFO] [stdout] test help_prints_flat_sort_options ... ok [INFO] [stdout] test sort_from_stdin_matches_file_input ... ok [INFO] [stdout] test queryname_sort_orders_records_lexicographically ... ok [INFO] [stdout] test verbose_flag_enables_info_logs ... ok [INFO] [stdout] test version_includes_fgumi_attribution ... ok [INFO] [stdout] test nonexistent_input_exits_nonzero ... ok [INFO] [stdout] test verify_passes_on_sorted_input ... ok [INFO] [stderr] Error: BAM file is NOT correctly sorted by Coordinate: 1 violations foundError: BAM file is NOT correctly sorted by Coordinate: 1 violations found [INFO] [stderr] [INFO] [stderr] Stack backtrace: [INFO] [stderr] 0: ::msg:: [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.104/src/backtrace.rs:10:14 [INFO] [stderr] 1: ::execute_verify [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:894:13 [INFO] [stderr] 2: ::execute [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:518:25 [INFO] [stderr] 3: mako::main [INFO] [stderr] at ./src/main.rs:71:14 [INFO] [stderr] 4: core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:250:5 [INFO] [stderr] 5: std::sys::backtrace::__rust_begin_short_backtrace:: core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/sys/backtrace.rs:166:18 [INFO] [stderr] 6: std::rt::lang_start::>::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:206:18 [INFO] [stderr] 7: <&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 8: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 9: std::panicking::catch_unwind:: + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 10: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 11: std::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:175:24 [INFO] [stderr] 12: std::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 13: std::panicking::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 14: std::panic::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 15: std::rt::lang_start_internal [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:171:5 [INFO] [stderr] 16: std::rt::lang_start::> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:205:5 [INFO] [stderr] 17: main [INFO] [stderr] 18: [INFO] [stderr] 19: __libc_start_main [INFO] [stderr] 20: _start [INFO] [stderr] Error: BAM file is NOT correctly sorted by Coordinate: 1 violations found [INFO] [stderr] [INFO] [stderr] Stack backtrace: [INFO] [stderr] 0: ::msg:: [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.104/src/backtrace.rs:10:14 [INFO] [stderr] 1: ::execute_verify [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:894:13 [INFO] [stderr] 2: ::execute [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:518:25 [INFO] [stderr] 3: mako::main [INFO] [stderr] at ./src/main.rs:71:14 [INFO] [stderr] 4: core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:250:5 [INFO] [stderr] 5: std::sys::backtrace::__rust_begin_short_backtrace:: core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/sys/backtrace.rs:166:18 [INFO] [stderr] 6: std::rt::lang_start::>::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:206:18 [INFO] [stderr] 7: <&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 8: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 9: std::panicking::catch_unwind:: + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 10: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 11: std::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:175:24 [INFO] [stderr] 12: std::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 13: std::panicking::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 14: std::panic::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 15: std::rt::lang_start_internal [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:171:5 [INFO] [stderr] 16: std::rt::lang_start::> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:205:5 [INFO] [stderr] 17: main [INFO] [stderr] 18: [INFO] [stderr] 19: __libc_start_main [INFO] [stderr] 20: _start [INFO] [stdout] test verify_fails_on_unsorted_input ... ok [INFO] [stdout] test compression_level_passthrough_level0_is_uncompressed ... ok [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] Stack backtrace: [INFO] [stderr] 0: ::msg:: [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/anyhow-1.0.104/src/backtrace.rs:10:14 [INFO] [stderr] 1: ::execute_verify [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:894:13 [INFO] [stderr] 2: ::execute [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/fgumi-0.7.0/src/lib/commands/sort.rs:518:25 [INFO] [stderr] 3: mako::main [INFO] [stderr] at ./src/main.rs:71:14 [INFO] [stderr] 4: core::result::Result<(), anyhow::Error> as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:250:5 [INFO] [stderr] 5: std::sys::backtrace::__rust_begin_short_backtrace:: core::result::Result<(), anyhow::Error>, core::result::Result<(), anyhow::Error>> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/sys/backtrace.rs:166:18 [INFO] [stderr] 6: std::rt::lang_start::>::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:206:18 [INFO] [stderr] 7: <&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync as core::ops::function::FnOnce<()>>::call_once [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:287:21 [INFO] [stderr] 8: std::panicking::catch_unwind::do_call::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 9: std::panicking::catch_unwind:: + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 10: std::panic::catch_unwind::<&dyn core::ops::function::Fn<(), Output = i32> + core::panic::unwind_safe::RefUnwindSafe + core::marker::Sync, i32> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 11: std::rt::lang_start_internal::{closure#0} [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:175:24 [INFO] [stderr] 12: std::panicking::catch_unwind::do_call:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:576:43 [INFO] [stderr] 13: std::panicking::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panicking.rs:544:19 [INFO] [stderr] 14: std::panic::catch_unwind:: [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/panic.rs:359:14 [INFO] [stderr] 15: std::rt::lang_start_internal [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:171:5 [INFO] [stderr] 16: std::rt::lang_start::> [INFO] [stderr] at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/std/src/rt.rs:205:5 [INFO] [stderr] 17: main [INFO] [stderr] 18: [INFO] [stderr] 19: __libc_start_main [INFO] [stderr] 20: _start [INFO] [stdout] test verify_accepts_stdin_input ... ok [INFO] [stdout] test default_max_temp_files_is_the_engine_auto_setting ... ok [INFO] [stdout] test explicit_max_temp_files_reaches_the_engine ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 13 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 6.56s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72", kill_on_drop: false }` [INFO] [stdout] 5db16ee022df534b08157143d884a3ca89114674b129f3b084f3c77113a5ee72