[INFO] cloning repository https://github.com/earth-metabolome-initiative/npc-smarts
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/earth-metabolome-initiative/npc-smarts" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] fe679565723a0ea03bf02a2b17e1994ee7b6b1d4
[INFO] testing earth-metabolome-initiative/npc-smarts against 1.99.0-beta.8 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fnpc-smarts" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/earth-metabolome-initiative/npc-smarts
[INFO] finished tweaking git repo https://github.com/earth-metabolome-initiative/npc-smarts
[INFO] tweaked toml for git repo https://github.com/earth-metabolome-initiative/npc-smarts written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/earth-metabolome-initiative/npc-smarts on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/earth-metabolome-initiative/npc-smarts already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/earth-metabolome-initiative/smarts-evolution`
[INFO] [stderr]     Updating git repository `https://github.com/earth-metabolome-initiative/smarts-rs`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c
[INFO] running `Command { std: "docker" "start" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
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[INFO] [stderr]    Compiling smarts-rs v0.1.0 (https://github.com/earth-metabolome-initiative/smarts-rs?branch=main#25320623)
[INFO] [stderr]    Compiling smarts-evolution v0.1.0 (https://github.com/earth-metabolome-initiative/smarts-evolution?branch=main#b5c781f8)
[INFO] [stderr]    Compiling chemtax-smarts v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 41s
[INFO] running `Command { std: "docker" "inspect" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling chemtax-smarts v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 7.10s
[INFO] running `Command { std: "docker" "inspect" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.58s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/deps/chemtax_smarts-5f976f770849deae)
[INFO] [stdout] 
[INFO] [stdout] running 34 tests
[INFO] [stdout] test download::tests::temporary_download_path_uses_part_suffix ... ok
[INFO] [stdout] test experiment::tests::count_outcomes_splits_completed_and_skipped ... ok
[INFO] [stdout] test experiment::tests::real_data_smoke_run ... ignored, requires local dataset files. Run with `cargo test -- --ignored` before release
[INFO] [stdout] test experiment::tests::evolution_config_uses_tuned_defaults ... ok
[INFO] [stdout] test experiment::tests::json_helpers_write_expected_payloads ... ok
[INFO] [stdout] test experiment::tests::evolution_config_forwards_slow_smarts_controls ... ok
[INFO] [stdout] test dataset::tests::vocabulary_load_preserves_head_order_and_labels ... ok
[INFO] [stdout] test experiment::tests::negatives_per_label_defaults_per_dataset ... ok
[INFO] [stdout] test experiment::tests::rejects_an_out_of_range_or_empty_shard ... ok
[INFO] [stdout] test experiment::tests::resume_from_reports_a_missing_log ... ok
[INFO] [stdout] test experiment::tests::compare_candidates_prefers_training_then_coverage_then_simplicity ... ok
[INFO] [stdout] test experiment::tests::evolution_config_can_disable_match_time_limit ... ok
[INFO] [stdout] test experiment::tests::skip_reason_reports_missing_negatives ... ok
[INFO] [stdout] test experiment::tests::skip_reason_reports_too_few_training_positives ... ok
[INFO] [stdout] test download::tests::missing_files_only_reports_absent_dataset_entries ... ok
[INFO] [stdout] test experiment::tests::evolution_config_can_disable_slow_smarts_logging ... ok
[INFO] [stdout] test dataset::tests::from_pairs_round_trips_head_order ... ok
[INFO] [stdout] test experiment::tests::shard_tasks_partition_the_plan_without_overlap ... ok
[INFO] [stdout] test experiment::tests::task_plan_sort_starts_with_fewest_training_examples ... ok
[INFO] [stdout] test dataset::tests::sampled_fold_caps_positives_and_negatives_by_class ... ok
[INFO] [stdout] test dataset::tests::dataset_split_loads_rows_and_builds_binary_fold ... ok
[INFO] [stdout] test experiment::tests::total_task_count_respects_head_limits ... ok
[INFO] [stdout] test dataset::tests::nine_head_classyfire_shape_loads_and_builds_folds ... ok
[INFO] [stdout] test experiment::tests::task_plan_filters_labels_with_too_few_training_examples ... ok
[INFO] [stdout] test experiment::tests::run_label_task_returns_skipped_when_thresholds_are_not_met ... ok
[INFO] [stdout] test experiment::tests::download_only_skips_planning_and_writes_no_results ... ok
[INFO] [stdout] test experiment::tests::run_label_task_completes_on_small_class_problem ... ok
[INFO] [stdout] test experiment::tests::run_aborts_when_data_dir_holds_a_different_dataset ... ok
[INFO] [stdout] test experiment::tests::seed_corpus_embeds_curated_smarts ... ok
[INFO] [stdout] test experiment::tests::smoke_run_npclassifier_end_to_end ... ok
[INFO] [stdout] test experiment::tests::resume_from_seeds_skip_without_copying_into_output ... ok
[INFO] [stdout] test experiment::tests::smoke_run_classyfire_end_to_end ... ok
[INFO] [stdout] test experiment::tests::sharded_runs_cover_the_same_labels_as_an_unsharded_run ... ok
[INFO] [stdout] test experiment::tests::resume_skips_labels_already_in_results_log ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 58.62s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/deps/chemtax_smarts-61372b5f4d774627)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests chemtax_smarts
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c", kill_on_drop: false }`
[INFO] [stdout] 6a09088fac368528eafac73fdb69d95538ca462dab7e658c1d536f77cf5a9d9c