[INFO] cloning repository https://github.com/AnimalByte/plexless
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/AnimalByte/plexless" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] eb622a4f7d983a82e39584815ee114addea62bf4
[INFO] testing AnimalByte/plexless against 1.100.0-beta.1 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/AnimalByte/plexless
[INFO] finished tweaking git repo https://github.com/AnimalByte/plexless
[INFO] tweaked toml for git repo https://github.com/AnimalByte/plexless written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AnimalByte/plexless on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AnimalByte/plexless already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing AnimalByte/plexless against 1.100.0-beta.1 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/AnimalByte/plexless
[INFO] finished tweaking git repo https://github.com/AnimalByte/plexless
[INFO] tweaked toml for git repo https://github.com/AnimalByte/plexless written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AnimalByte/plexless on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AnimalByte/plexless already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing AnimalByte/plexless against 1.100.0-beta.1 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/AnimalByte/plexless
[INFO] finished tweaking git repo https://github.com/AnimalByte/plexless
[INFO] tweaked toml for git repo https://github.com/AnimalByte/plexless written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AnimalByte/plexless on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AnimalByte/plexless already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[ERROR] error running command: no output for 300 seconds
[INFO] testing AnimalByte/plexless against 1.100.0-beta.1 for beta-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAnimalByte%2Fplexless" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc2/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/AnimalByte/plexless
[INFO] finished tweaking git repo https://github.com/AnimalByte/plexless
[INFO] tweaked toml for git repo https://github.com/AnimalByte/plexless written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/AnimalByte/plexless on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/AnimalByte/plexless already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded strum_macros v0.26.4
[INFO] [stderr]   Downloaded darling_macro v0.24.1
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded cc v1.4.5
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded bzip2 v0.6.1
[INFO] [stderr]   Downloaded darling v0.24.1
[INFO] [stderr]   Downloaded zstd-safe v7.3.0
[INFO] [stderr]   Downloaded libbz2-rs-sys v0.2.5
[INFO] [stderr]   Downloaded bon v3.10.1
[INFO] [stderr]   Downloaded prettyplease v0.3.0
[INFO] [stderr]   Downloaded libz-rs-sys v0.6.7
[INFO] [stderr]   Downloaded bon-macros v3.10.1
[INFO] [stderr]   Downloaded darling_core v0.24.1
[INFO] [stderr]   Downloaded rapidgzip-core v0.3.1
[INFO] [stderr]   Downloaded zlib-rs v0.6.7
[INFO] [stderr]   Downloaded bindgen v0.72.1
[INFO] [stderr]   Downloaded needletail v0.7.3
[INFO] [stderr]   Downloaded zstd-sys v2.1.0+zstd.1.5.7
[INFO] [stderr]   Downloaded libz-sys v1.1.29
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3111399a4047eeb3a02b7a90e478d715f38a8c6669b5c4b49d30a17385265909" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e
[INFO] running `Command { std: "docker" "start" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling find-msvc-tools v0.1.12
[INFO] [stderr]    Compiling glob v0.3.4
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling minimal-lexical v0.2.1
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling either v1.18.0
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]    Compiling smallvec v1.16.1
[INFO] [stderr]    Compiling syn v3.0.5
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]    Compiling bitflags v2.13.2
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling prettyplease v0.3.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling aho-corasick v1.1.5
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling zlib-rs v0.6.7
[INFO] [stderr]    Compiling crc32fast v1.5.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.21
[INFO] [stderr]    Compiling cc v1.4.5
[INFO] [stderr]    Compiling zstd-safe v7.3.0
[INFO] [stderr]    Compiling anstyle-parse v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.14
[INFO] [stderr]    Compiling clang-sys v1.9.1
[INFO] [stderr]    Compiling colorchoice v1.0.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling anstyle-query v1.1.5
[INFO] [stderr]    Compiling percent-encoding v2.3.2
[INFO] [stderr]    Compiling thiserror v2.0.20
[INFO] [stderr]    Compiling crossbeam-deque v0.8.8
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.2
[INFO] [stderr]    Compiling miniz_oxide v0.9.1
[INFO] [stderr]    Compiling anstream v1.0.0
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling form_urlencoded v1.2.2
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling clap_lex v1.1.0
[INFO] [stderr]    Compiling libbz2-rs-sys v0.2.5
[INFO] [stderr]    Compiling clap_builder v4.6.6
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling regex-automata v0.4.18
[INFO] [stderr]    Compiling bzip2 v0.6.1
[INFO] [stderr]    Compiling buffer-redux v1.1.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling crossbeam-channel v0.5.17
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling zstd-sys v2.1.0+zstd.1.5.7
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling darling_core v0.24.1
[INFO] [stderr]    Compiling libz-rs-sys v0.6.7
[INFO] [stderr]    Compiling flate2 v1.1.10
[INFO] [stderr]    Compiling zerovec-derive v0.11.6
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling clap_derive v4.6.4
[INFO] [stderr]    Compiling zerotrie v0.2.5
[INFO] [stderr]    Compiling zerovec v0.11.8
[INFO] [stderr]    Compiling tinystr v0.8.4
[INFO] [stderr]    Compiling potential_utf v0.1.6
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling icu_collections v2.3.0
[INFO] [stderr]    Compiling icu_locale_core v2.3.0
[INFO] [stderr]    Compiling clap v4.6.6
[INFO] [stderr]    Compiling darling_macro v0.24.1
[INFO] [stderr]    Compiling darling v0.24.1
[INFO] [stderr]    Compiling bon-macros v3.10.1
[INFO] [stderr]    Compiling icu_provider v2.3.1
[INFO] [stderr]    Compiling icu_normalizer v2.3.0
[INFO] [stderr]    Compiling icu_properties v2.3.0
[INFO] [stderr]    Compiling hts-sys v2.2.1
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling idna_adapter v1.2.2
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling needletail v0.7.3
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling bon v3.10.1
[INFO] [stderr]    Compiling rapidgzip-core v0.3.1
[INFO] [stderr]    Compiling rust-htslib v1.0.1
[INFO] [stderr]    Compiling plexless v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 57.27s
[INFO] running `Command { std: "docker" "inspect" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling plexless v0.6.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 23.47s
[INFO] running `Command { std: "docker" "inspect" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.36s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/debug/build/plexless/ab87aeb755591513/out/plexless-ab87aeb755591513)
[INFO] [stdout] 
[INFO] [stdout] running 67 tests
[INFO] [stdout] test cram::tests::cram_output_target_owner_rejects_invalid_destinations ... ok
[INFO] [stdout] test cli::tests::byte_sizes_accept_auto_and_binary_suffixes ... ok
[INFO] [stdout] test cram::tests::descriptor_preflight_honors_explicit_max_open_files ... ok
[INFO] [stdout] test cli::tests::low_sample_fraction_is_bounded ... ok
[INFO] [stdout] test cram::tests::cram_output_targets_have_one_stable_writer_owner ... ok
[INFO] [stdout] test cli::tests::output_format_cannot_enable_fastq_to_cram ... ok
[INFO] [stdout] test cli::tests::cram_cli_requires_explicit_mode_and_output_format ... ok
[INFO] [stdout] test cram::tests::descriptor_preflight_rejects_insufficient_hard_limit ... ok
[INFO] [stdout] test cram::tests::header_grouping_accepts_standard_queryname_declarations ... ok
[INFO] [stdout] test cram::tests::program_id_does_not_collide ... ok
[INFO] [stdout] test output::tests::auto_policy_scales_and_clamps_by_stream_count ... ok
[INFO] [stdout] test cram::tests::descriptor_preflight_raises_only_the_soft_limit ... ok
[INFO] [stdout] test cram::tests::explicit_finalization_status_is_fallible ... ok
[INFO] [stdout] test decoder::tests::n_aware_decode_covers_exact_corrected_ambiguous_and_unmatched ... ok
[INFO] [stdout] test output::tests::forced_output_modes_bypass_auto_selection ... ok
[INFO] [stdout] test output::tests::layout_counts_se_pe_and_unassigned_streams ... ok
[INFO] [stdout] test output::tests::memory_pressure_flushes_without_waiting_for_chunk_target ... ok
[INFO] [stdout] test output::tests::fastq_auto_policy_uses_qualified_chunk_target ... ok
[INFO] [stdout] test output::tests::explicit_policy_honors_valid_values_and_rejects_unsafe_ones ... ok
[INFO] [stdout] test cli::tests::fastq_cli_does_not_require_new_cram_options ... ok
[INFO] [stdout] test fastq::tests::xz_fastq_remains_supported_with_htslib_lzma_enabled ... ok
[INFO] [stdout] test output::tests::explicit_budget_may_exceed_two_gib_when_memory_allows ... ok
[INFO] [stdout] test parallel::tests::batch_owned_fastq_block_keeps_fields_in_one_immutable_backing ... ok
[INFO] [stdout] test parallel::tests::compression_credits_respect_count_and_byte_limits ... ok
[INFO] [stdout] test parallel::tests::injected_pipeline_failure_child ... ok
[INFO] [stdout] test parallel::tests::cram_dispatch_channel_failure_cancels_the_pipeline ... ok
[INFO] [stdout] test parallel::tests::dedicated_accumulator_consumes_one_existing_worker_slot ... ok
[INFO] [stdout] test output::tests::accumulates_across_appends_and_sequences_chunks_per_output ... ok
[INFO] [stdout] test parallel::tests::first_pipeline_failure_wins_and_wakes_worker_gates ... ok
[INFO] [stdout] test output::tests::auto_mode_uses_the_exact_stream_threshold ... ok
[INFO] [stdout] test parallel::tests::buffered_worker_counts_match_fixed_paired_fastq_plan ... ok
[INFO] [stdout] test parallel::tests::worker_slot_split_keeps_routing_and_parallel_compression_live ... ok
[INFO] [stdout] test pass_through::tests::boundaries_and_sequence_quality_coordinates ... ok
[INFO] [stdout] test pass_through::tests::failed_anchor_verification_continues_to_real_distal_start ... ok
[INFO] [stdout] test qc::tests::low_representation_uses_nonzero_median_and_threshold ... ok
[INFO] [stdout] test parallel::tests::batch_owned_fastq_descriptors_are_compact_and_pointer_free ... ok
[INFO] [stdout] test pass_through::tests::weak_or_short_anchors_are_unavailable ... ok
[INFO] [stdout] test qc::tests::paired_metrics_count_fragments_once_and_require_both_mates ... ok
[INFO] [stdout] test parallel::tests::fastq_owned_record_layout_did_not_gain_cram_metadata ... ok
[INFO] [stdout] test qc::tests::sample_counts_reconcile_with_global_assigned_count ... ok
[INFO] [stdout] test thread_plan::tests::cram_fastq_thread_plan_uses_bounded_quarter_for_decode ... ok
[INFO] [stdout] test pass_through::tests::rolling_scan_agrees_with_scalar_reference ... ok
[INFO] [stdout] test thread_plan::tests::cram_output_writer_experiment_rejects_impossible_budget ... ok
[INFO] [stdout] test parallel::tests::cram_dispatch_restores_batch_order_before_deterministic_sharding ... ok
[INFO] [stdout] test cram::tests::exactly_one_writer_accepts_each_cram_destination ... ok
[INFO] [stdout] test parallel::tests::batch_owned_fastq_spans_reject_overflow_and_out_of_bounds_access ... ok
[INFO] [stdout] test thread_plan::tests::adaptive_input_growth_preserves_two_output_pipeline_workers ... ok
[INFO] [stdout] test parallel::tests::ordered_writers_fail_instead_of_skipping_missing_units ... ok
[INFO] [stdout] test qc::tests::completeness_handles_all_present_missing_all_zero_and_single_sample ... ok
[INFO] [stdout] test stats::tests::clips_short_structured_reads_without_panicking ... ok
[INFO] [stdout] test stats::tests::projects_biological_and_physical_barcode_regions ... ok
[INFO] [stdout] test pass_through::tests::long_chunked_verification_checks_all_known_bases ... ok
[INFO] [stdout] test parallel::tests::per_output_ordering_allows_independent_sample_progress ... ok
[INFO] [stdout] test pass_through::tests::mismatch_budget_and_conservative_observed_unknowns ... ok
[INFO] [stdout] test thread_plan::tests::cram_output_thread_plan_keeps_decode_inline ... ok
[INFO] [stdout] test thread_plan::tests::low_queue_pressure_moves_slot_to_input ... ok
[INFO] [stdout] test thread_plan::tests::sixty_four_thread_server_plans_scale ... ok
[INFO] [stdout] test thread_plan::tests::small_budgets_skip_rapidgzip ... ok
[INFO] [stdout] test writer::tests::adaptive_writer_limit_reserves_descriptors_and_caps_default ... ok
[INFO] [stdout] test thread_plan::tests::eight_thread_paired_budget_counts_both_parsers ... ok
[INFO] [stdout] test thread_plan::tests::eight_thread_single_end_budget_counts_parser_thread ... ok
[INFO] [stdout] test thread_plan::tests::cram_output_writer_experiment_stays_within_global_budget ... ok
[INFO] [stdout] test thread_plan::tests::high_queue_pressure_moves_slot_to_workers ... ok
[INFO] [stdout] test writer::tests::completing_run_removes_incomplete_marker ... ok
[INFO] [stdout] test writer::tests::incomplete_marker_survives_drop_and_blocks_output_reuse ... ok
[INFO] [stdout] test parallel::tests::permit_guard_returns_credit_during_unwind ... ok
[INFO] [stdout] test parallel::tests::injected_failures_cancel_saturated_pipelines_without_deadlock ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 67 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 25.46s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/debug/build/plexless/8131fb2ca4243c33/out/plexless-8131fb2ca4243c33)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/barcode_behavior.rs (/opt/rustwide/target/debug/build/plexless/9a0d0c9d67fe4fe1/out/barcode_behavior-9a0d0c9d67fe4fe1)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test one_mismatch_is_corrected_and_routed ... ok
[INFO] [stdout] test read_shorter_than_structure_is_unmatched_without_panicking ... ok
[INFO] [stdout] test valid_barcodes_with_missing_sample_combination_are_unrouted ... ok
[INFO] [stdout] test barcode_beyond_mismatch_limit_is_unmatched_and_written_raw ... ok
[INFO] [stdout] test paired_fastq_stats_keep_barcode_mate_cycles_and_orientation ... ok
[INFO] [stdout] test fastq_stats_separate_biological_and_barcode_regions ... ok
[INFO] [stdout] test one_n_is_rescued_but_two_ns_are_unmatched ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/config_validation.rs (/opt/rustwide/target/debug/build/plexless/858eefcef2587b91/out/config_validation-858eefcef2587b91)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test logical_barcode_longer_than_32_bases_is_rejected ... ok
[INFO] [stdout] test barcode_length_must_match_read_structure ... ok
[INFO] [stdout] test invalid_structure_symbol_is_rejected ... ok
[INFO] [stdout] test unsafe_one_mismatch_whitelist_geometry_is_rejected ... ok
[INFO] [stdout] test duplicate_barcode_id_is_rejected ... ok
[INFO] [stdout] test duplicate_sample_name_is_rejected ... ok
[INFO] [stdout] test duplicate_barcode_sequence_is_rejected ... ok
[INFO] [stdout] test duplicate_sample_barcode_combination_is_rejected ... ok
[INFO] [stdout] test unknown_sample_barcode_id_is_rejected ... ok
[INFO] [stdout] test close_whitelist_is_allowed_when_correction_is_disabled ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cram_support.rs (/opt/rustwide/target/debug/build/plexless/4be92d2ede3d2f4f/out/cram_support-4be92d2ede3d2f4f)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stderr] [W::cram_get_ref] Failed to populate reference for id 0
[INFO] [stderr] [W::cram_write_SAM_hdr] No M5 tags present and could not find reference
[INFO] [stderr] [W::cram_write_SAM_hdr] Enabling embed_ref=2 option
[INFO] [stderr] [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference
[INFO] [stderr] [W::cram_get_ref] Failed to populate reference for id 0
[INFO] [stderr] [W::cram_write_SAM_hdr] No M5 tags present and could not find reference
[INFO] [stderr] [W::cram_write_SAM_hdr] Enabling embed_ref=2 option
[INFO] [stderr] [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference
[INFO] [stderr] [W::cram_encode_container] Failed to build reference, switching to non-ref mode
[INFO] [stderr] [W::cram_get_ref] Failed to populate reference for id 0
[INFO] [stderr] [W::cram_write_SAM_hdr] No M5 tags present and could not find reference
[INFO] [stderr] [W::cram_write_SAM_hdr] Enabling embed_ref=2 option
[INFO] [stderr] [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference
[INFO] [stderr] [W::cram_encode_container] Failed to build reference, switching to non-ref mode
[INFO] [stdout] test corrupt_cram_decode_failure_retains_incomplete_marker ... ok
[INFO] [stdout] test paired_cram_rewrites_mate_sequence_and_quality_tags ... ok
[INFO] [stdout] test single_cram_to_fastq_matches_fastq_routing_and_quality ... ok
[INFO] [stdout] test invalid_metadata_rewrite_type_fails_and_retains_incomplete_marker ... ok
[INFO] [stdout] test cram_to_cram_preserves_and_transforms_metadata_by_policy ... ok
[INFO] [stdout] test paired_cram_uses_flags_allows_both_orders_and_orphans ... ok
[INFO] [stdout] test rejects_aligned_and_malformed_paired_cram ... ok
[INFO] [stdout] test distal_bounds_reach_cram_fastq_and_metadata_writers ... ok
[INFO] [stdout] test rejects_all_v1_record_contract_violations_and_retains_runtime_marker ... ok
[INFO] [stderr]      Running tests/hierarchical_routing.rs (/opt/rustwide/target/debug/build/plexless/6df7fb7893d946ed/out/hierarchical_routing-6df7fb7893d946ed)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.14s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test basic_hierarchical_exact_routing ... ok
[INFO] [stdout] test n_aware_matching_is_restricted_to_the_current_node ... ok
[INFO] [stdout] test three_level_hierarchy_routes_to_leaf_sample ... ok
[INFO] [stdout] test unused_root_barcode_is_unrouted ... ok
[INFO] [stdout] test child_sequence_reuse_is_allowed_across_parent_namespaces ... ok
[INFO] [stdout] test correction_safety_is_validated_per_parent_node ... ok
[INFO] [stdout] test correction_collision_between_true_siblings_is_rejected_with_path ... ok
[INFO] [stdout] test dense_grid_maps_shuffled_rows_and_preserves_n_correction ... ok
[INFO] [stdout] test more_than_three_generic_barcode_levels_are_supported ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.16s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/orientation_demux.rs (/opt/rustwide/target/debug/build/plexless/ab80e5a39995af26/out/orientation_demux-ab80e5a39995af26)
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test asymmetric_paired_layout_assembles_repeated_a_and_trims_independently ... ok
[INFO] [stdout] test paired_reverse_complement_piece_routes_and_trims_each_mate ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/output_modes.rs (/opt/rustwide/target/debug/build/plexless/607c548e34408d4c/out/output_modes-607c548e34408d4c)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test operational_failures_leave_incomplete_markers_in_every_output_path ... ok
[INFO] [stdout] test direct_and_buffered_single_end_outputs_and_qc_are_equivalent ... ok
[INFO] [stderr]      Running tests/paired_end.rs (/opt/rustwide/target/debug/build/plexless/99a102bde19ee362/out/paired_end-99a102bde19ee362)
[INFO] [stdout] test direct_and_buffered_paired_outputs_and_qc_are_equivalent ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 1.90s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test paired_end_demux_combines_a_and_b_across_mates_and_trims_t_from_each_mate ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/paired_errors.rs (/opt/rustwide/target/debug/build/plexless/559534087adf354a/out/paired_errors-559534087adf354a)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test missing_r2_mate_becomes_r1_orphan_and_processing_resynchronizes ... ok
[INFO] [stdout] test orphan_recovery_does_not_require_unassigned_output ... ok
[INFO] [stdout] test missing_r1_mate_becomes_r2_orphan_and_processing_resynchronizes ... ok
[INFO] [stdout] test trailing_r2_record_is_orphan_not_fatal_error ... ok
[INFO] [stdout] test trailing_r1_record_is_orphan_not_fatal_error ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.06s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/parallel_gzip_input.rs (/opt/rustwide/target/debug/build/plexless/f985504843509e7a/out/parallel_gzip_input-f985504843509e7a)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test automatic_parallel_gzip_rejects_corrupt_footer ... ok
[INFO] [stdout] test automatic_parallel_gzip_paired_end_preserves_pair_resync ... ok
[INFO] [stderr]      Running tests/parallel_paired.rs (/opt/rustwide/target/debug/build/plexless/1254a8968dc4347c/out/parallel_paired-1254a8968dc4347c)
[INFO] [stdout] test automatic_parallel_gzip_single_end_matches_serial_reference ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.24s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]      Running tests/parallel_single_end.rs (/opt/rustwide/target/debug/build/plexless/b9521bd5d62abd55/out/parallel_single_end-b9521bd5d62abd55)
[INFO] [stdout] test parallel_paired_matches_serial_with_orphan_resynchronization ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.32s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test parallel_single_end_matches_serial_and_preserves_order_across_batches ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.22s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/pass_through.rs (/opt/rustwide/target/debug/build/plexless/c2410be64d842086/out/pass_through-c2410be64d842086)
[INFO] [stdout] 
[INFO] [stdout] running 6 tests
[INFO] [stdout] test explicit_override_long_structure_orientation_and_sample_specificity ... ok
[INFO] [stdout] test unavailable_anchor_diagnostic_and_override_validation ... ok
[INFO] [stdout] test corrected_assignment_uses_canonical_distal_and_unassigned_is_not_scanned ... ok
[INFO] [stdout] test pe_false_anchor_candidates_do_not_hide_later_distal_or_affect_other_mate ... ok
[INFO] [stderr]      Running tests/scalable_output_qc.rs (/opt/rustwide/target/debug/build/plexless/d2a2e48ba3a9dcfc/out/scalable_output_qc-d2a2e48ba3a9dcfc)
[INFO] [stdout] test pe_automatic_inference_repeated_pieces_rc_and_independent_mates ... ok
[INFO] [stdout] test se_default_symmetric_inference_and_disable_across_writers ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.22s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test metrics_include_missing_and_low_samples_and_preserve_full_headers ... ok
[INFO] [stdout] test sparse_reads_across_paired_outputs_preserve_r1_r2_correspondence ... ok
[INFO] [stdout] test sparse_reads_across_384_single_end_outputs_remain_complete ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.35s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/single_end.rs (/opt/rustwide/target/debug/build/plexless/321a2d311107085a/out/single_end-321a2d311107085a)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test single_end_demux_decodes_a_and_b_and_trims_t ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/structure_plans.rs (/opt/rustwide/target/debug/build/plexless/20514241948ecc56/out/structure_plans-20514241948ecc56)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test repeated_symbols_are_planned_in_r1_then_r2_order ... ok
[INFO] [stdout] test asymmetric_layout_has_correct_piece_mates_and_trim_prefixes ... ok
[INFO] [stdout] test generic_symbols_except_t_are_accepted ... ok
[INFO] [stdout] test malformed_orientation_syntax_is_rejected ... ok
[INFO] [stdout] test reverse_complement_applies_only_to_the_marked_piece ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/threads_cli.rs (/opt/rustwide/target/debug/build/plexless/835c4a167f2b8e71/out/threads_cli-835c4a167f2b8e71)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test threads_is_a_global_demux_option ... ok
[INFO] [stdout] test output_mode_defaults_to_auto ... ok
[INFO] [stdout] test advanced_output_and_qc_options_parse_human_sizes ... ok
[INFO] [stdout] test zero_threads_is_rejected ... ok
[INFO] [stdout] test all_output_modes_parse_and_invalid_values_fail ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stderr]      Running tests/writer_cache.rs (/opt/rustwide/target/debug/build/plexless/d98d4dd4f252c42d/out/writer_cache-d98d4dd4f252c42d)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 2 tests
[INFO] [stdout] test reserved_unassigned_sample_name_is_rejected_before_output_creation ... ok
[INFO] [stdout] test writer_cache_reopen_produces_valid_concatenated_gzip_members ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests plexless
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e", kill_on_drop: false }`
[INFO] [stdout] b8b635fb53284d364e0709e1cf354f9177234ce9e07e66511c0213be7a63cc3e