[INFO] fetching crate coverm 0.6.1... [INFO] checking coverm-0.6.1 against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] extracting crate coverm 0.6.1 into /workspace/builds/worker-4-tc1/source [INFO] validating manifest of crates.io crate coverm 0.6.1 on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate coverm 0.6.1 [INFO] finished tweaking crates.io crate coverm 0.6.1 [INFO] tweaked toml for crates.io crate coverm 0.6.1 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate crates.io crate coverm 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded rand_chacha v0.3.0 [INFO] [stderr] Downloaded rand_hc v0.3.0 [INFO] [stderr] Downloaded getrandom v0.2.2 [INFO] [stderr] Downloaded rand_core v0.6.2 [INFO] [stderr] Downloaded version-compare v0.0.11 [INFO] [stderr] Downloaded rand v0.8.3 [INFO] [stderr] Downloaded rust-htslib v0.36.0 [INFO] [stderr] Downloaded memoffset v0.6.1 [INFO] [stderr] Downloaded cargo-husky v1.5.0 [INFO] [stderr] Downloaded idna v0.2.2 [INFO] [stderr] Downloaded finch v0.3.0 [INFO] [stderr] Downloaded assert_cli v0.6.3 [INFO] [stderr] Downloaded bstr v0.2.15 [INFO] [stderr] Downloaded needletail v0.3.2 [INFO] [stderr] Downloaded bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Downloaded csv v1.1.5 [INFO] [stderr] Downloaded lzma-sys v0.1.17 [INFO] [stderr] Downloaded libz-sys v1.1.2 [INFO] [stderr] Downloaded capnp v0.9.5 [INFO] [stderr] Downloaded hts-sys v1.11.1-fix1 [INFO] [stderr] Downloaded bit-set v0.5.2 [INFO] [stderr] Downloaded array-macro v1.0.5 [INFO] [stderr] Downloaded 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murmurhash3 v0.0.5 [INFO] [stderr] Downloaded itertools v0.7.11 [INFO] [stderr] Downloaded rawpointer v0.1.0 [INFO] [stderr] Downloaded matrixmultiply v0.1.15 [INFO] [stderr] Downloaded ndarray v0.12.1 [INFO] [stderr] Downloaded galah v0.3.0 [INFO] [stderr] Downloaded nix v0.20.0 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded derefable v0.1.0 [INFO] [stderr] Downloaded vcpkg v0.2.11 [INFO] [stderr] Downloaded linear-map v1.2.0 [INFO] [stderr] Downloaded newtype_derive v0.1.4 [INFO] [stderr] Downloaded strum_macros v0.20.1 [INFO] [stderr] Downloaded tinyvec v1.1.1 [INFO] [stderr] Downloaded unicode-normalization v0.1.17 [INFO] [stderr] Downloaded url v2.2.1 [INFO] [stderr] Downloaded bzip2 v0.3.3 [INFO] [stderr] Downloaded xz2 v0.1.6 [INFO] [stderr] Downloaded needletail v0.4.0 [INFO] [stderr] Downloaded crossbeam-channel v0.5.0 [INFO] [stderr] Downloaded crossbeam-epoch v0.9.2 [INFO] [stderr] Downloaded rustversion v1.0.4 [INFO] [stderr] Downloaded rayon-core v1.9.0 [INFO] [stderr] Downloaded rayon v1.5.0 [INFO] [stderr] Downloaded bio-types v0.10.0 [INFO] [stderr] Downloaded buf_redux v0.8.4 [INFO] [stderr] Downloaded partitions v0.2.4 [INFO] [stderr] Downloaded generator v0.6.24 [INFO] [stderr] Downloaded scoped-tls v1.0.0 [INFO] [stderr] Downloaded loom v0.4.0 [INFO] [stderr] Downloaded crossbeam-utils v0.8.2 [INFO] [stderr] Downloaded roff v0.1.0 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded jobserver v0.1.21 [INFO] [stderr] Downloaded cc v1.0.67 [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded once_cell v1.7.0 [INFO] [stderr] Downloaded unicode-bidi v0.3.4 [INFO] [stderr] Downloaded matches v0.1.8 [INFO] [stderr] Downloaded libc v0.2.86 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fe7c38d4cb0661641a753f9eb2dfe24511b0e21195e097100fbeac2fba41d006 [INFO] running `Command { std: "docker" "start" "-a" "fe7c38d4cb0661641a753f9eb2dfe24511b0e21195e097100fbeac2fba41d006", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe7c38d4cb0661641a753f9eb2dfe24511b0e21195e097100fbeac2fba41d006", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe7c38d4cb0661641a753f9eb2dfe24511b0e21195e097100fbeac2fba41d006", kill_on_drop: false }` [INFO] [stdout] fe7c38d4cb0661641a753f9eb2dfe24511b0e21195e097100fbeac2fba41d006 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] f414a039258261e1b4b48552722ce3ae44f36def697677bc17d9a911fdebc809 [INFO] running `Command { std: "docker" "start" "-a" "f414a039258261e1b4b48552722ce3ae44f36def697677bc17d9a911fdebc809", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.2 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Checking regex-syntax v0.6.22 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking gimli v0.23.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Checking object v0.23.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Compiling serde_json v1.0.62 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking rustc-demangle v0.1.18 [INFO] [stderr] Checking tinyvec v1.1.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking crossbeam-epoch v0.9.2 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking unicode-normalization v0.1.17 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking roff v0.1.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Checking bird_tool_utils-man v0.4.0 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Checking idna v0.2.2 [INFO] [stderr] Checking capnp v0.9.5 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking version-compare v0.0.10 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking murmurhash3 v0.0.5 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking url v2.2.1 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking env_logger v0.8.3 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Checking backtrace v0.3.56 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking nix v0.20.0 [INFO] [stderr] Checking version-compare v0.0.11 [INFO] [stderr] Compiling cargo-husky v1.5.0 [INFO] [stderr] Checking colored v1.9.3 [INFO] [stderr] Checking environment v0.1.1 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Checking needletail v0.3.2 [INFO] [stderr] Checking needletail v0.4.0 [INFO] [stderr] Checking partitions v0.2.4 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking thiserror v1.0.24 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking rust-htslib v0.36.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking bincode v1.3.2 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking assert_cli v0.6.3 [INFO] [stderr] Checking checkm v0.1.0 [INFO] [stderr] Checking finch v0.3.0 [INFO] [stderr] Checking bird_tool_utils v0.3.0 [INFO] [stderr] Checking galah v0.3.0 [INFO] [stderr] Checking coverm v0.6.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/contig.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `OutputWriter` is imported redundantly [INFO] [stdout] --> src/coverage_printer.rs:551:9 [INFO] [stdout] | [INFO] [stdout] 547 | use super::*; [INFO] [stdout] | -------- the item `OutputWriter` is already imported here [INFO] [stdout] ... [INFO] [stdout] 551 | use OutputWriter; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_takers.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_printer.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_takers.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/genome.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome.rs:816:25 [INFO] [stdout] | [INFO] [stdout] 816 | return &target_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 816 - return &target_name[(0..offset)]; [INFO] [stdout] 816 + return &target_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome.rs:816:25 [INFO] [stdout] | [INFO] [stdout] 816 | return &target_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 816 - return &target_name[(0..offset)]; [INFO] [stdout] 816 + return &target_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome_exclusion.rs:59:35 [INFO] [stdout] | [INFO] [stdout] 59 | let genome = &contig_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 59 - let genome = &contig_name[(0..offset)]; [INFO] [stdout] 59 + let genome = &contig_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome_exclusion.rs:59:35 [INFO] [stdout] | [INFO] [stdout] 59 | let genome = &contig_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 59 - let genome = &contig_name[(0..offset)]; [INFO] [stdout] 59 + let genome = &contig_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/mapping_index_maintenance.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/mapping_index_maintenance.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `complete_processes` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use bam_generator::complete_processes; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 21 | use bam_generator::*; [INFO] [stdout] | ---------------- the item `complete_processes` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `complete_processes` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use bam_generator::complete_processes; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 21 | use bam_generator::*; [INFO] [stdout] | ---------------- the item `complete_processes` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 15 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 13 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 39.58s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 4` [INFO] running `Command { std: "docker" "inspect" "f414a039258261e1b4b48552722ce3ae44f36def697677bc17d9a911fdebc809", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f414a039258261e1b4b48552722ce3ae44f36def697677bc17d9a911fdebc809", kill_on_drop: false }` [INFO] [stdout] f414a039258261e1b4b48552722ce3ae44f36def697677bc17d9a911fdebc809 [INFO] checking coverm-0.6.1 against try#645bb72776a6a56a1a8f52631a44bd082b2ba509 for absurd-question-mark-desugar [INFO] extracting crate coverm 0.6.1 into /workspace/builds/worker-4-tc2/source [INFO] validating manifest of crates.io crate coverm 0.6.1 on toolchain 645bb72776a6a56a1a8f52631a44bd082b2ba509 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate coverm 0.6.1 [INFO] finished tweaking crates.io crate coverm 0.6.1 [INFO] tweaked toml for crates.io crate coverm 0.6.1 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] crate crates.io crate coverm 0.6.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4372f56764d3f9c457136883e81e0558a42c473567c8403574572706300d2166 [INFO] running `Command { std: "docker" "start" "-a" "4372f56764d3f9c457136883e81e0558a42c473567c8403574572706300d2166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4372f56764d3f9c457136883e81e0558a42c473567c8403574572706300d2166", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4372f56764d3f9c457136883e81e0558a42c473567c8403574572706300d2166", kill_on_drop: false }` [INFO] [stdout] 4372f56764d3f9c457136883e81e0558a42c473567c8403574572706300d2166 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] dadc134f9b4cb2ad22d4a938d69d4079f939dcac475bd721a1ab0c857432f883 [INFO] running `Command { std: "docker" "start" "-a" "dadc134f9b4cb2ad22d4a938d69d4079f939dcac475bd721a1ab0c857432f883", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.86 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling syn v1.0.60 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling serde_derive v1.0.123 [INFO] [stderr] Compiling serde v1.0.123 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Checking once_cell v1.7.0 [INFO] [stderr] Checking ppv-lite86 v0.2.10 [INFO] [stderr] Checking regex-syntax v0.6.22 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling crossbeam-utils v0.8.2 [INFO] [stderr] Compiling memoffset v0.6.1 [INFO] [stderr] Checking adler v0.2.3 [INFO] [stderr] Compiling getrandom v0.2.2 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Checking thread_local v1.1.3 [INFO] [stderr] Checking quick-error v1.2.3 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Checking itoa v0.4.7 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Checking gimli v0.23.0 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Checking object v0.23.0 [INFO] [stderr] Checking termcolor v1.1.2 [INFO] [stderr] Checking crossbeam-epoch v0.9.2 [INFO] [stderr] Checking regex-automata v0.1.9 [INFO] [stderr] Checking crossbeam-channel v0.5.0 [INFO] [stderr] Checking aho-corasick v0.7.15 [INFO] [stderr] Checking matches v0.1.8 [INFO] [stderr] Checking tinyvec_macros v0.1.0 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Compiling matrixmultiply v0.1.15 [INFO] [stderr] Checking rustc-demangle v0.1.18 [INFO] [stderr] Compiling serde_json v1.0.62 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Checking crossbeam-deque v0.8.0 [INFO] [stderr] Checking tinyvec v1.1.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking humantime v1.3.0 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking num_cpus v1.13.0 [INFO] [stderr] Checking getrandom v0.1.16 [INFO] [stderr] Checking flate2 v1.0.20 [INFO] [stderr] Checking remove_dir_all v0.5.3 [INFO] [stderr] Checking rawpointer v0.1.0 [INFO] [stderr] Checking rand_core v0.6.2 [INFO] [stderr] Checking rand_core v0.5.1 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Checking unicode-bidi v0.3.4 [INFO] [stderr] Checking itertools v0.7.11 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking bytecount v0.6.2 [INFO] [stderr] Checking roff v0.1.0 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Checking rand_chacha v0.2.2 [INFO] [stderr] Checking hashbrown v0.9.1 [INFO] [stderr] Checking rand_chacha v0.3.0 [INFO] [stderr] Checking form_urlencoded v1.0.1 [INFO] [stderr] Checking matrixmultiply v0.2.4 [INFO] [stderr] Checking bird_tool_utils-man v0.4.0 [INFO] [stderr] Checking regex v1.4.3 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Checking rand v0.7.3 [INFO] [stderr] Compiling cc v1.0.67 [INFO] [stderr] Checking memmap v0.7.0 [INFO] [stderr] Checking rand v0.8.3 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking capnp v0.9.5 [INFO] [stderr] Checking unicode-normalization v0.1.17 [INFO] [stderr] Checking bit-vec v0.5.1 [INFO] [stderr] Checking fixedbitset v0.2.0 [INFO] [stderr] Checking array-macro v1.0.5 [INFO] [stderr] Checking newtype_derive v0.1.4 [INFO] [stderr] Checking version-compare v0.0.10 [INFO] [stderr] Checking murmurhash3 v0.0.5 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking addr2line v0.14.1 [INFO] [stderr] Checking tempfile v3.2.0 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking petgraph v0.5.1 [INFO] [stderr] Checking rand v0.4.6 [INFO] [stderr] Checking approx v0.3.2 [INFO] [stderr] Checking ordered-float v1.1.1 [INFO] [stderr] Checking backtrace v0.3.56 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking env_logger v0.7.1 [INFO] [stderr] Checking env_logger v0.8.3 [INFO] [stderr] Checking statrs v0.12.0 [INFO] [stderr] Checking itertools v0.9.0 [INFO] [stderr] Checking strum v0.18.0 [INFO] [stderr] Checking triple_accel v0.3.4 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking idna v0.2.2 [INFO] [stderr] Checking nix v0.20.0 [INFO] [stderr] Checking version-compare v0.0.11 [INFO] [stderr] Compiling cargo-husky v1.5.0 [INFO] [stderr] Checking colored v1.9.3 [INFO] [stderr] Checking environment v0.1.1 [INFO] [stderr] Checking difference v2.0.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.10+1.0.8 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Checking url v2.2.1 [INFO] [stderr] Checking tempdir v0.3.7 [INFO] [stderr] Checking partitions v0.2.4 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking xz2 v0.1.6 [INFO] [stderr] Checking bzip2 v0.3.3 [INFO] [stderr] Checking needletail v0.3.2 [INFO] [stderr] Checking needletail v0.4.0 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror-impl v1.0.24 [INFO] [stderr] Compiling snafu-derive v0.6.10 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Checking enum-map v0.6.4 [INFO] [stderr] Checking thiserror v1.0.24 [INFO] [stderr] Checking failure v0.1.8 [INFO] [stderr] Checking bio-types v0.10.0 [INFO] [stderr] Checking snafu v0.6.10 [INFO] [stderr] Checking rust-htslib v0.36.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bstr v0.2.15 [INFO] [stderr] Checking bincode v1.3.2 [INFO] [stderr] Checking multimap v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking clap v2.33.3 [INFO] [stderr] Checking csv v1.1.5 [INFO] [stderr] Checking assert_cli v0.6.3 [INFO] [stderr] Checking checkm v0.1.0 [INFO] [stderr] Checking finch v0.3.0 [INFO] [stderr] Checking bird_tool_utils v0.3.0 [INFO] [stderr] Checking galah v0.3.0 [INFO] [stderr] Checking coverm v0.6.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/cli.rs:248:100 [INFO] [stdout] | [INFO] [stdout] 248 | To fix, set the {} environment variable e.g. to set it to use the current directory: {}\n\n\ [INFO] [stdout] | ____________________________________________________________________________________________________^ [INFO] [stdout] 249 | | [INFO] [stdout] 250 | | {} Either is fine, CoverM determines which is being used by virtue of being less than \ [INFO] [stdout] | |________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/contig.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_printer.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_takers.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/genome.rs:3:5 [INFO] [stdout] | [INFO] [stdout] 3 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome.rs:816:25 [INFO] [stdout] | [INFO] [stdout] 816 | return &target_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 816 - return &target_name[(0..offset)]; [INFO] [stdout] 816 + return &target_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome_exclusion.rs:59:35 [INFO] [stdout] | [INFO] [stdout] 59 | let genome = &contig_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 59 - let genome = &contig_name[(0..offset)]; [INFO] [stdout] 59 + let genome = &contig_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/mapping_index_maintenance.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `complete_processes` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use bam_generator::complete_processes; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 21 | use bam_generator::*; [INFO] [stdout] | ---------------- the item `complete_processes` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/bam_generator.rs:17:5 [INFO] [stdout] | [INFO] [stdout] 17 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `OutputWriter` is imported redundantly [INFO] [stdout] --> src/coverage_printer.rs:551:9 [INFO] [stdout] | [INFO] [stdout] 547 | use super::*; [INFO] [stdout] | -------- the item `OutputWriter` is already imported here [INFO] [stdout] ... [INFO] [stdout] 551 | use OutputWriter; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/coverage_takers.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome.rs:816:25 [INFO] [stdout] | [INFO] [stdout] 816 | return &target_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_parens)]` on by default [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 816 - return &target_name[(0..offset)]; [INFO] [stdout] 816 + return &target_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unnecessary parentheses around index expression [INFO] [stdout] --> src/genome_exclusion.rs:59:35 [INFO] [stdout] | [INFO] [stdout] 59 | let genome = &contig_name[(0..offset)]; [INFO] [stdout] | ^ ^ [INFO] [stdout] | [INFO] [stdout] help: remove these parentheses [INFO] [stdout] | [INFO] [stdout] 59 - let genome = &contig_name[(0..offset)]; [INFO] [stdout] 59 + let genome = &contig_name[0..offset]; [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/mapping_index_maintenance.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use std; [INFO] [stdout] | ^^^ the item `std` is already imported by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `tempfile` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:18:5 [INFO] [stdout] | [INFO] [stdout] 18 | use tempfile; [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] ::: src/lib.rs:28:1 [INFO] [stdout] | [INFO] [stdout] 28 | extern crate tempfile; [INFO] [stdout] | ---------------------- the item `tempfile` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `complete_processes` is imported redundantly [INFO] [stdout] --> src/shard_bam_reader.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use bam_generator::complete_processes; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] 21 | use bam_generator::*; [INFO] [stdout] | ---------------- the item `complete_processes` is already imported here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 15 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:159:16 [INFO] [stdout] | [INFO] [stdout] 159 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 160 | | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | | &reference_path [INFO] [stdout] 162 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] = note: `#[warn(non_fmt_panics)]` on by default [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 159 ~ panic!( [INFO] [stdout] 160 | "The reference specified '{}' does not appear to exist", [INFO] [stdout] 161 | &reference_path [INFO] [stdout] 162 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: panic message is not a string literal [INFO] [stdout] --> src/mapping_parameters.rs:164:16 [INFO] [stdout] | [INFO] [stdout] 164 | panic!(format!( [INFO] [stdout] | ________________^ [INFO] [stdout] 165 | | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | | &reference_path [INFO] [stdout] 167 | | )); [INFO] [stdout] | |_________^ [INFO] [stdout] | [INFO] [stdout] = note: this usage of `panic!()` is deprecated; it will be a hard error in Rust 2021 [INFO] [stdout] = note: for more information, see [INFO] [stdout] = note: the `panic!()` macro supports formatting, so there's no need for the `format!()` macro here [INFO] [stdout] help: remove the `format!(..)` macro call [INFO] [stdout] | [INFO] [stdout] 164 ~ panic!( [INFO] [stdout] 165 | "The reference specified '{}' should be a file, not e.g. a directory", [INFO] [stdout] 166 | &reference_path [INFO] [stdout] 167 ~ ); [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 13 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 36.71s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4, partitions v0.2.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 3` [INFO] running `Command { std: "docker" "inspect" "dadc134f9b4cb2ad22d4a938d69d4079f939dcac475bd721a1ab0c857432f883", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "dadc134f9b4cb2ad22d4a938d69d4079f939dcac475bd721a1ab0c857432f883", kill_on_drop: false }` [INFO] [stdout] dadc134f9b4cb2ad22d4a938d69d4079f939dcac475bd721a1ab0c857432f883