[INFO] cloning repository https://github.com/mvalorilab/somaticbatch
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mvalorilab/somaticbatch" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 43654256b8b3a5da72ccc8921ca454fea65387eb
[INFO] checking mvalorilab/somaticbatch against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mvalorilab/somaticbatch on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] finished tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] tweaked toml for git repo https://github.com/mvalorilab/somaticbatch written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/mvalorilab/somaticbatch already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded float_extras v0.1.6
[INFO] [stderr]   Downloaded libm v0.2.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 65b8b7277bc2b748efa1b39a10e58e91a9b500be3418923062d0c0015de3fe5b
[INFO] running `Command { std: "docker" "start" "-a" "65b8b7277bc2b748efa1b39a10e58e91a9b500be3418923062d0c0015de3fe5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "65b8b7277bc2b748efa1b39a10e58e91a9b500be3418923062d0c0015de3fe5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "65b8b7277bc2b748efa1b39a10e58e91a9b500be3418923062d0c0015de3fe5b", kill_on_drop: false }`
[INFO] [stdout] 65b8b7277bc2b748efa1b39a10e58e91a9b500be3418923062d0c0015de3fe5b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2ff4debc80161c2812997ffa6ee48f06486e2900064a2fabc1d7cc2108e9e6dc
[INFO] running `Command { std: "docker" "start" "-a" "2ff4debc80161c2812997ffa6ee48f06486e2900064a2fabc1d7cc2108e9e6dc", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking linked-hash-map v0.5.4
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]     Checking getrandom v0.2.4
[INFO] [stderr]     Checking float_extras v0.1.6
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 26.35s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "2ff4debc80161c2812997ffa6ee48f06486e2900064a2fabc1d7cc2108e9e6dc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2ff4debc80161c2812997ffa6ee48f06486e2900064a2fabc1d7cc2108e9e6dc", kill_on_drop: false }`
[INFO] [stdout] 2ff4debc80161c2812997ffa6ee48f06486e2900064a2fabc1d7cc2108e9e6dc
[INFO] checking mvalorilab/somaticbatch against try#645bb72776a6a56a1a8f52631a44bd082b2ba509 for absurd-question-mark-desugar
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmvalorilab%2Fsomaticbatch" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mvalorilab/somaticbatch on toolchain 645bb72776a6a56a1a8f52631a44bd082b2ba509
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] finished tweaking git repo https://github.com/mvalorilab/somaticbatch
[INFO] tweaked toml for git repo https://github.com/mvalorilab/somaticbatch written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/mvalorilab/somaticbatch already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 69c3a76858aba8b62756baeb0a36c7458df565cbc8e604da03038a1b7555e1be
[INFO] running `Command { std: "docker" "start" "-a" "69c3a76858aba8b62756baeb0a36c7458df565cbc8e604da03038a1b7555e1be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "69c3a76858aba8b62756baeb0a36c7458df565cbc8e604da03038a1b7555e1be", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "69c3a76858aba8b62756baeb0a36c7458df565cbc8e604da03038a1b7555e1be", kill_on_drop: false }`
[INFO] [stdout] 69c3a76858aba8b62756baeb0a36c7458df565cbc8e604da03038a1b7555e1be
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f72320394d41d8fcf41cf6af3a1472ecb05f177c0f7a161bc2b830f467f778e4
[INFO] running `Command { std: "docker" "start" "-a" "f72320394d41d8fcf41cf6af3a1472ecb05f177c0f7a161bc2b830f467f778e4", kill_on_drop: false }`
[INFO] [stderr]    Compiling libm v0.2.2
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling libc v0.2.118
[INFO] [stderr]    Compiling proc-macro2 v1.0.36
[INFO] [stderr]    Compiling unicode-xid v0.2.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling syn v1.0.86
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling num-rational v0.4.0
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling paste v1.0.6
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking linked-hash-map v0.5.4
[INFO] [stderr]     Checking getrandom v0.2.4
[INFO] [stderr]     Checking float_extras v0.1.6
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]    Compiling quote v1.0.15
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking num-complex v0.4.0
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]     Checking simba v0.5.1
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking amplicon_caller v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 27.99s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "f72320394d41d8fcf41cf6af3a1472ecb05f177c0f7a161bc2b830f467f778e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f72320394d41d8fcf41cf6af3a1472ecb05f177c0f7a161bc2b830f467f778e4", kill_on_drop: false }`
[INFO] [stdout] f72320394d41d8fcf41cf6af3a1472ecb05f177c0f7a161bc2b830f467f778e4