[INFO] cloning repository https://github.com/NileshArnaiya/genetics [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/NileshArnaiya/genetics" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNileshArnaiya%2Fgenetics", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNileshArnaiya%2Fgenetics'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 161a3183193f8465faf73621fd3002946ab46da6 [INFO] checking NileshArnaiya/genetics against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNileshArnaiya%2Fgenetics" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/NileshArnaiya/genetics on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/NileshArnaiya/genetics [INFO] finished tweaking git repo https://github.com/NileshArnaiya/genetics [INFO] tweaked toml for git repo https://github.com/NileshArnaiya/genetics written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/NileshArnaiya/genetics already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 58fae82780d4ade7ceb872c57b11d2ba1dbd3f6f71ab3af2e74180c664c42be6 [INFO] running `Command { std: "docker" "start" "-a" "58fae82780d4ade7ceb872c57b11d2ba1dbd3f6f71ab3af2e74180c664c42be6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "58fae82780d4ade7ceb872c57b11d2ba1dbd3f6f71ab3af2e74180c664c42be6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "58fae82780d4ade7ceb872c57b11d2ba1dbd3f6f71ab3af2e74180c664c42be6", kill_on_drop: false }` [INFO] [stdout] 58fae82780d4ade7ceb872c57b11d2ba1dbd3f6f71ab3af2e74180c664c42be6 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 275dff06a93c34979279037e434ae734d9d72c4db3515838b5605fca6f548f76 [INFO] running `Command { std: "docker" "start" "-a" "275dff06a93c34979279037e434ae734d9d72c4db3515838b5605fca6f548f76", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.144 [INFO] [stderr] Compiling crossbeam-utils v0.8.15 [INFO] [stderr] Compiling memoffset v0.8.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.14 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Checking either v1.8.1 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Checking getrandom v0.2.9 [INFO] [stderr] Checking num_cpus v1.15.0 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking assign3 v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SeedableRng` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use rand::{Rng, SeedableRng}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> src/main.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use std::io::{BufRead, BufWriter, Write, Result}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::seq::SliceRandom; // [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::SeekFrom` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::io::SeekFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SeedableRng` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use rand::{Rng, SeedableRng}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> src/main.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use std::io::{BufRead, BufWriter, Write, Result}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::seq::SliceRandom; // [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::SeekFrom` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::io::SeekFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cases_aaf` [INFO] [stdout] --> src/main.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let cases_aaf = snp.cases_alt_count as f64 / cases_total_count as f64; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cases_aaf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `controls_aaf` [INFO] [stdout] --> src/main.rs:96:9 [INFO] [stdout] | [INFO] [stdout] 96 | let controls_aaf = snp.controls_alt_count as f64 / controls_total_count as f64; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_controls_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `shift` [INFO] [stdout] --> src/main.rs:163:16 [INFO] [stdout] | [INFO] [stdout] 163 | let shift = bits_per_byte - bits_per_individual * (j % 4) - bits_per_individual; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_shift` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cases_aaf` [INFO] [stdout] --> src/main.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let cases_aaf = snp.cases_alt_count as f64 / cases_total_count as f64; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cases_aaf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `controls_aaf` [INFO] [stdout] --> src/main.rs:96:9 [INFO] [stdout] | [INFO] [stdout] 96 | let controls_aaf = snp.controls_alt_count as f64 / controls_total_count as f64; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_controls_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `shift` [INFO] [stdout] --> src/main.rs:163:16 [INFO] [stdout] | [INFO] [stdout] 163 | let shift = bits_per_byte - bits_per_individual * (j % 4) - bits_per_individual; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_shift` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:417:21 [INFO] [stdout] | [INFO] [stdout] 417 | for i in 1..(degrees_of_freedom / 2) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:417:21 [INFO] [stdout] | [INFO] [stdout] 417 | for i in 1..(degrees_of_freedom / 2) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bim_reader` [INFO] [stdout] --> src/main.rs:469:9 [INFO] [stdout] | [INFO] [stdout] 469 | let bim_reader = BufReader::new(bim_file); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bim_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `labels` [INFO] [stdout] --> src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | let labels = match extract_labels_from_file(&fam_file) { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_labels` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aaf` [INFO] [stdout] --> src/main.rs:543:9 [INFO] [stdout] | [INFO] [stdout] 543 | let aaf: Vec = vec![0.0, 0.44444445, 0.5, 0.42857143, 0.25]; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bim_reader` [INFO] [stdout] --> src/main.rs:469:9 [INFO] [stdout] | [INFO] [stdout] 469 | let bim_reader = BufReader::new(bim_file); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bim_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `labels` [INFO] [stdout] --> src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | let labels = match extract_labels_from_file(&fam_file) { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_labels` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aaf` [INFO] [stdout] --> src/main.rs:543:9 [INFO] [stdout] | [INFO] [stdout] 543 | let aaf: Vec = vec![0.0, 0.44444445, 0.5, 0.42857143, 0.25]; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:454:9 [INFO] [stdout] | [INFO] [stdout] 454 | let mut plink_base_name = &args[1]; [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:455:9 [INFO] [stdout] | [INFO] [stdout] 455 | let mut no_permutations = args[2].parse::().unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:461:9 [INFO] [stdout] | [INFO] [stdout] 461 | let mut bim_filename = format!("{}.bim", plink_base_name); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:462:9 [INFO] [stdout] | [INFO] [stdout] 462 | let mut bim_file = match File::open(bim_filename.clone()) { [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:472:9 [INFO] [stdout] | [INFO] [stdout] 472 | let mut fam_file = format!("{}.fam", plink_base_name); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:473:9 [INFO] [stdout] | [INFO] [stdout] 473 | let mut fam_contents = std::fs::read_to_string(&fam_file).expect("Error reading fam file"); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SNP` is never constructed [INFO] [stdout] --> src/main.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | struct SNP { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/main.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 24 | impl SNP { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 25 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compute_p_value` is never used [INFO] [stdout] --> src/main.rs:73:4 [INFO] [stdout] | [INFO] [stdout] 73 | fn compute_p_value(observed_chi2: f64, permuted_chi2: Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_chi_square` is never used [INFO] [stdout] --> src/main.rs:86:4 [INFO] [stdout] | [INFO] [stdout] 86 | fn calculate_chi_square(snp: &SNP) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_observed_chi_square` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn calculate_observed_chi_square(snps: &[SNP]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_type` is never used [INFO] [stdout] --> src/main.rs:442:4 [INFO] [stdout] | [INFO] [stdout] 442 | fn print_type(_: &T) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:454:9 [INFO] [stdout] | [INFO] [stdout] 454 | let mut plink_base_name = &args[1]; [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:455:9 [INFO] [stdout] | [INFO] [stdout] 455 | let mut no_permutations = args[2].parse::().unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:461:9 [INFO] [stdout] | [INFO] [stdout] 461 | let mut bim_filename = format!("{}.bim", plink_base_name); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:462:9 [INFO] [stdout] | [INFO] [stdout] 462 | let mut bim_file = match File::open(bim_filename.clone()) { [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:472:9 [INFO] [stdout] | [INFO] [stdout] 472 | let mut fam_file = format!("{}.fam", plink_base_name); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:473:9 [INFO] [stdout] | [INFO] [stdout] 473 | let mut fam_contents = std::fs::read_to_string(&fam_file).expect("Error reading fam file"); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SNP` is never constructed [INFO] [stdout] --> src/main.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | struct SNP { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/main.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 24 | impl SNP { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 25 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compute_p_value` is never used [INFO] [stdout] --> src/main.rs:73:4 [INFO] [stdout] | [INFO] [stdout] 73 | fn compute_p_value(observed_chi2: f64, permuted_chi2: Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_chi_square` is never used [INFO] [stdout] --> src/main.rs:86:4 [INFO] [stdout] | [INFO] [stdout] 86 | fn calculate_chi_square(snp: &SNP) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_observed_chi_square` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn calculate_observed_chi_square(snps: &[SNP]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_type` is never used [INFO] [stdout] --> src/main.rs:442:4 [INFO] [stdout] | [INFO] [stdout] 442 | fn print_type(_: &T) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 25 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 25 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.38s [INFO] running `Command { std: "docker" "inspect" "275dff06a93c34979279037e434ae734d9d72c4db3515838b5605fca6f548f76", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "275dff06a93c34979279037e434ae734d9d72c4db3515838b5605fca6f548f76", kill_on_drop: false }` [INFO] [stdout] 275dff06a93c34979279037e434ae734d9d72c4db3515838b5605fca6f548f76 [INFO] checking NileshArnaiya/genetics against try#645bb72776a6a56a1a8f52631a44bd082b2ba509 for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FNileshArnaiya%2Fgenetics" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/NileshArnaiya/genetics on toolchain 645bb72776a6a56a1a8f52631a44bd082b2ba509 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/NileshArnaiya/genetics [INFO] finished tweaking git repo https://github.com/NileshArnaiya/genetics [INFO] tweaked toml for git repo https://github.com/NileshArnaiya/genetics written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/NileshArnaiya/genetics already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 15e85ed494eb49d03478353ed293aa924a4b84969e70525842f788467fde785e [INFO] running `Command { std: "docker" "start" "-a" "15e85ed494eb49d03478353ed293aa924a4b84969e70525842f788467fde785e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "15e85ed494eb49d03478353ed293aa924a4b84969e70525842f788467fde785e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "15e85ed494eb49d03478353ed293aa924a4b84969e70525842f788467fde785e", kill_on_drop: false }` [INFO] [stdout] 15e85ed494eb49d03478353ed293aa924a4b84969e70525842f788467fde785e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 35d427fc1551ecea2f780011090d9960df03c48df85c42d2fb456b47c23f5aaf [INFO] running `Command { std: "docker" "start" "-a" "35d427fc1551ecea2f780011090d9960df03c48df85c42d2fb456b47c23f5aaf", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.144 [INFO] [stderr] Compiling crossbeam-utils v0.8.15 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Checking either v1.8.1 [INFO] [stderr] Compiling memoffset v0.8.0 [INFO] [stderr] Compiling crossbeam-epoch v0.9.14 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Checking getrandom v0.2.9 [INFO] [stderr] Checking num_cpus v1.15.0 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking assign3 v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `SeedableRng` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use rand::{Rng, SeedableRng}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> src/main.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use std::io::{BufRead, BufWriter, Write, Result}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::seq::SliceRandom; // [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::SeekFrom` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::io::SeekFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `SeedableRng` [INFO] [stdout] --> src/main.rs:4:17 [INFO] [stdout] | [INFO] [stdout] 4 | use rand::{Rng, SeedableRng}; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> src/main.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:6:24 [INFO] [stdout] | [INFO] [stdout] 6 | use std::io::{BufRead, BufWriter, Write, Result}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::seq::SliceRandom` [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::seq::SliceRandom; // [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::error::Error` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use std::error::Error; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::SeekFrom` [INFO] [stdout] --> src/main.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::io::SeekFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cases_aaf` [INFO] [stdout] --> src/main.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let cases_aaf = snp.cases_alt_count as f64 / cases_total_count as f64; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cases_aaf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `controls_aaf` [INFO] [stdout] --> src/main.rs:96:9 [INFO] [stdout] | [INFO] [stdout] 96 | let controls_aaf = snp.controls_alt_count as f64 / controls_total_count as f64; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_controls_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `shift` [INFO] [stdout] --> src/main.rs:163:16 [INFO] [stdout] | [INFO] [stdout] 163 | let shift = bits_per_byte - bits_per_individual * (j % 4) - bits_per_individual; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_shift` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:417:21 [INFO] [stdout] | [INFO] [stdout] 417 | for i in 1..(degrees_of_freedom / 2) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bim_reader` [INFO] [stdout] --> src/main.rs:469:9 [INFO] [stdout] | [INFO] [stdout] 469 | let bim_reader = BufReader::new(bim_file); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bim_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `labels` [INFO] [stdout] --> src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | let labels = match extract_labels_from_file(&fam_file) { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_labels` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aaf` [INFO] [stdout] --> src/main.rs:543:9 [INFO] [stdout] | [INFO] [stdout] 543 | let aaf: Vec = vec![0.0, 0.44444445, 0.5, 0.42857143, 0.25]; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cases_aaf` [INFO] [stdout] --> src/main.rs:95:9 [INFO] [stdout] | [INFO] [stdout] 95 | let cases_aaf = snp.cases_alt_count as f64 / cases_total_count as f64; [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cases_aaf` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `controls_aaf` [INFO] [stdout] --> src/main.rs:96:9 [INFO] [stdout] | [INFO] [stdout] 96 | let controls_aaf = snp.controls_alt_count as f64 / controls_total_count as f64; [INFO] [stdout] | ^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_controls_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `shift` [INFO] [stdout] --> src/main.rs:163:16 [INFO] [stdout] | [INFO] [stdout] 163 | let shift = bits_per_byte - bits_per_individual * (j % 4) - bits_per_individual; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_shift` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:454:9 [INFO] [stdout] | [INFO] [stdout] 454 | let mut plink_base_name = &args[1]; [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:455:9 [INFO] [stdout] | [INFO] [stdout] 455 | let mut no_permutations = args[2].parse::().unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:461:9 [INFO] [stdout] | [INFO] [stdout] 461 | let mut bim_filename = format!("{}.bim", plink_base_name); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:462:9 [INFO] [stdout] | [INFO] [stdout] 462 | let mut bim_file = match File::open(bim_filename.clone()) { [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:472:9 [INFO] [stdout] | [INFO] [stdout] 472 | let mut fam_file = format!("{}.fam", plink_base_name); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:473:9 [INFO] [stdout] | [INFO] [stdout] 473 | let mut fam_contents = std::fs::read_to_string(&fam_file).expect("Error reading fam file"); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SNP` is never constructed [INFO] [stdout] --> src/main.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | struct SNP { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/main.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 24 | impl SNP { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 25 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compute_p_value` is never used [INFO] [stdout] --> src/main.rs:73:4 [INFO] [stdout] | [INFO] [stdout] 73 | fn compute_p_value(observed_chi2: f64, permuted_chi2: Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:417:21 [INFO] [stdout] | [INFO] [stdout] 417 | for i in 1..(degrees_of_freedom / 2) { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_chi_square` is never used [INFO] [stdout] --> src/main.rs:86:4 [INFO] [stdout] | [INFO] [stdout] 86 | fn calculate_chi_square(snp: &SNP) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_observed_chi_square` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn calculate_observed_chi_square(snps: &[SNP]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_type` is never used [INFO] [stdout] --> src/main.rs:442:4 [INFO] [stdout] | [INFO] [stdout] 442 | fn print_type(_: &T) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `bim_reader` [INFO] [stdout] --> src/main.rs:469:9 [INFO] [stdout] | [INFO] [stdout] 469 | let bim_reader = BufReader::new(bim_file); [INFO] [stdout] | ^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_bim_reader` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `labels` [INFO] [stdout] --> src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | let labels = match extract_labels_from_file(&fam_file) { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_labels` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `aaf` [INFO] [stdout] --> src/main.rs:543:9 [INFO] [stdout] | [INFO] [stdout] 543 | let aaf: Vec = vec![0.0, 0.44444445, 0.5, 0.42857143, 0.25]; [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_aaf` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:454:9 [INFO] [stdout] | [INFO] [stdout] 454 | let mut plink_base_name = &args[1]; [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:455:9 [INFO] [stdout] | [INFO] [stdout] 455 | let mut no_permutations = args[2].parse::().unwrap(); [INFO] [stdout] | ----^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:461:9 [INFO] [stdout] | [INFO] [stdout] 461 | let mut bim_filename = format!("{}.bim", plink_base_name); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:462:9 [INFO] [stdout] | [INFO] [stdout] 462 | let mut bim_file = match File::open(bim_filename.clone()) { [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:472:9 [INFO] [stdout] | [INFO] [stdout] 472 | let mut fam_file = format!("{}.fam", plink_base_name); [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:473:9 [INFO] [stdout] | [INFO] [stdout] 473 | let mut fam_contents = std::fs::read_to_string(&fam_file).expect("Error reading fam file"); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `SNP` is never constructed [INFO] [stdout] --> src/main.rs:14:8 [INFO] [stdout] | [INFO] [stdout] 14 | struct SNP { [INFO] [stdout] | ^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function `new` is never used [INFO] [stdout] --> src/main.rs:25:8 [INFO] [stdout] | [INFO] [stdout] 24 | impl SNP { [INFO] [stdout] | -------- associated function in this implementation [INFO] [stdout] 25 | fn new( [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `compute_p_value` is never used [INFO] [stdout] --> src/main.rs:73:4 [INFO] [stdout] | [INFO] [stdout] 73 | fn compute_p_value(observed_chi2: f64, permuted_chi2: Vec) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_chi_square` is never used [INFO] [stdout] --> src/main.rs:86:4 [INFO] [stdout] | [INFO] [stdout] 86 | fn calculate_chi_square(snp: &SNP) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `calculate_observed_chi_square` is never used [INFO] [stdout] --> src/main.rs:112:4 [INFO] [stdout] | [INFO] [stdout] 112 | fn calculate_observed_chi_square(snps: &[SNP]) -> Vec { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `print_type` is never used [INFO] [stdout] --> src/main.rs:442:4 [INFO] [stdout] | [INFO] [stdout] 442 | fn print_type(_: &T) { [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 25 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 25 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 5.86s [INFO] running `Command { std: "docker" "inspect" "35d427fc1551ecea2f780011090d9960df03c48df85c42d2fb456b47c23f5aaf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35d427fc1551ecea2f780011090d9960df03c48df85c42d2fb456b47c23f5aaf", kill_on_drop: false }` [INFO] [stdout] 35d427fc1551ecea2f780011090d9960df03c48df85c42d2fb456b47c23f5aaf