[INFO] cloning repository https://github.com/Benjamin-Lee/circkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Benjamin-Lee/circkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f3ea92a81104619b1d4f93dc836c1a4977a4d128
[INFO] checking Benjamin-Lee/circkit against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Benjamin-Lee/circkit on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] finished tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] tweaked toml for git repo https://github.com/Benjamin-Lee/circkit written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/Benjamin-Lee/circkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rstest v0.15.0
[INFO] [stderr]   Downloaded rstest_macros v0.14.0
[INFO] [stderr]   Downloaded proptest v1.1.0
[INFO] [stderr]   Downloaded getrandom v0.2.9
[INFO] [stderr]   Downloaded io-lifetimes v1.0.10
[INFO] [stderr]   Downloaded tempfile v3.5.0
[INFO] [stderr]   Downloaded assert_cmd v2.0.11
[INFO] [stderr]   Downloaded bstr v1.4.0
[INFO] [stderr]   Downloaded linux-raw-sys v0.3.3
[INFO] [stderr]   Downloaded zstd-sys v2.0.8+zstd.1.5.5
[INFO] [stderr]   Downloaded globset v0.4.10
[INFO] [stderr]   Downloaded assert_fs v1.0.13
[INFO] [stderr]   Downloaded clap-verbosity-flag v1.0.1
[INFO] [stderr]   Downloaded anstyle-parse v0.2.0
[INFO] [stderr]   Downloaded anstyle-wincon v1.0.0
[INFO] [stderr]   Downloaded anstream v0.3.0
[INFO] [stderr]   Downloaded object v0.30.3
[INFO] [stderr]   Downloaded os_info v3.7.0
[INFO] [stderr]   Downloaded serde_spanned v0.6.1
[INFO] [stderr]   Downloaded toml_datetime v0.6.1
[INFO] [stderr]   Downloaded winnow v0.4.1
[INFO] [stderr]   Downloaded toml_edit v0.19.8
[INFO] [stderr]   Downloaded toml v0.7.3
[INFO] [stderr]   Downloaded uuid v1.3.1
[INFO] [stderr]   Downloaded human-panic v1.1.4
[INFO] [stderr]   Downloaded needletail v0.5.1
[INFO] [stderr]   Downloaded bgzip v0.2.2
[INFO] [stderr]   Downloaded flate2 v1.0.25
[INFO] [stderr]   Downloaded zstd-safe v6.0.5+zstd.1.5.4
[INFO] [stderr]   Downloaded zstd v0.12.3+zstd.1.5.2
[INFO] [stderr]   Downloaded niffler v2.5.0
[INFO] [stderr]   Downloaded anstyle v1.0.0
[INFO] [stderr]   Downloaded buffer-redux v1.0.0
[INFO] [stderr]   Downloaded seq_io v0.3.2
[INFO] [stderr]   Downloaded xxhash-rust v0.8.6
[INFO] [stderr]   Downloaded anyhow v1.0.70
[INFO] [stderr]   Downloaded enum-map-derive v0.6.0
[INFO] [stderr]   Downloaded enum-map v1.1.1
[INFO] [stderr]   Downloaded ordered-float v3.6.0
[INFO] [stderr]   Downloaded regex v1.7.3
[INFO] [stderr]   Downloaded paste v1.0.12
[INFO] [stderr]   Downloaded safe_arch v0.6.0
[INFO] [stderr]   Downloaded wide v0.7.8
[INFO] [stderr]   Downloaded rustversion v1.0.12
[INFO] [stderr]   Downloaded bio v1.3.1
[INFO] [stderr]   Downloaded libm v0.2.6
[INFO] [stderr]   Downloaded rustix v0.37.12
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4a77f15fa6d2ecfc0cdba1120cd46d32494113919dea1eb84eb17e36a25155c6
[INFO] running `Command { std: "docker" "start" "-a" "4a77f15fa6d2ecfc0cdba1120cd46d32494113919dea1eb84eb17e36a25155c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4a77f15fa6d2ecfc0cdba1120cd46d32494113919dea1eb84eb17e36a25155c6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4a77f15fa6d2ecfc0cdba1120cd46d32494113919dea1eb84eb17e36a25155c6", kill_on_drop: false }`
[INFO] [stdout] 4a77f15fa6d2ecfc0cdba1120cd46d32494113919dea1eb84eb17e36a25155c6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6ebadcd36017002226ee0cefab4cf8bb88e78cd1e70e3ae4b3a38446bdcb9397
[INFO] running `Command { std: "docker" "start" "-a" "6ebadcd36017002226ee0cefab4cf8bb88e78cd1e70e3ae4b3a38446bdcb9397", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.141
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling serde v1.0.183
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling serde_derive v1.0.183
[INFO] [stderr]     Checking aho-corasick v0.7.20
[INFO] [stderr]    Compiling io-lifetimes v1.0.10
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling rustix v0.37.12
[INFO] [stderr]    Compiling quote v1.0.32
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]     Checking regex v1.7.3
[INFO] [stderr]    Compiling syn v2.0.28
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]     Checking getrandom v0.2.9
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking linux-raw-sys v0.3.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking once_cell v1.17.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling paste v1.0.12
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]     Checking bytemuck v1.13.1
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking safe_arch v0.6.0
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking wide v0.7.8
[INFO] [stderr]    Compiling zstd-sys v2.0.8+zstd.1.5.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]    Compiling semver v1.0.17
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling slab v0.4.8
[INFO] [stderr]     Checking anstyle v1.0.0
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling anyhow v1.0.70
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling futures-channel v0.3.28
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling zstd-safe v6.0.5+zstd.1.5.4
[INFO] [stderr]     Checking futures-sink v0.3.28
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]     Checking petgraph v0.6.3
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling darling_core v0.14.4
[INFO] [stderr]     Checking bstr v1.4.0
[INFO] [stderr]    Compiling futures-macro v0.3.28
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking is-terminal v0.4.7
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]     Checking serde_spanned v0.6.1
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking toml_datetime v0.6.1
[INFO] [stderr]    Compiling backtrace v0.3.67
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.6.0
[INFO] [stderr]     Checking termcolor v1.2.0
[INFO] [stderr]     Checking gimli v0.27.2
[INFO] [stderr]     Checking futures-io v0.3.28
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]     Checking os_str_bytes v6.5.1
[INFO] [stderr]     Checking winnow v0.4.1
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking fastrand v1.9.0
[INFO] [stderr]     Checking anstyle-parse v0.2.0
[INFO] [stderr]     Checking tempfile v3.5.0
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking buffer-redux v1.0.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]    Compiling rstest_macros v0.14.0
[INFO] [stderr]    Compiling darling_macro v0.14.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling darling v0.14.4
[INFO] [stderr]    Compiling derive_builder_core v0.11.2
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking addr2line v0.19.0
[INFO] [stderr]     Checking toml_edit v0.19.8
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling derive_builder_macro v0.11.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking aho-corasick v1.0.1
[INFO] [stderr]     Checking object v0.30.3
[INFO] [stderr]     Checking bio-types v1.0.0
[INFO] [stderr]     Checking textwrap v0.16.0
[INFO] [stderr]     Checking derive_builder v0.11.2
[INFO] [stderr]     Checking anstyle-query v1.0.0
[INFO] [stderr]     Checking predicates-core v1.0.6
[INFO] [stderr]     Checking anstream v0.3.0
[INFO] [stderr]     Checking walkdir v2.3.3
[INFO] [stderr]     Checking futures-executor v0.3.28
[INFO] [stderr]     Checking bgzip v0.2.2
[INFO] [stderr]     Checking globset v0.4.10
[INFO] [stderr]     Checking toml v0.7.3
[INFO] [stderr]     Checking os_info v3.7.0
[INFO] [stderr]     Checking thread_local v1.1.7
[INFO] [stderr]     Checking float-cmp v0.9.0
[INFO] [stderr]     Checking uuid v1.3.1
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking termtree v0.4.1
[INFO] [stderr]     Checking env_logger v0.10.0
[INFO] [stderr]     Checking predicates-tree v1.0.9
[INFO] [stderr]     Checking seq_io v0.3.2
[INFO] [stderr]     Checking predicates v3.0.3
[INFO] [stderr]     Checking ignore v0.4.20
[INFO] [stderr]     Checking futures v0.3.28
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]     Checking xxhash-rust v0.8.6
[INFO] [stderr]     Checking futures-timer v3.0.2
[INFO] [stderr]     Checking nohash-hasher v0.2.0
[INFO] [stderr]     Checking globwalk v0.8.1
[INFO] [stderr]     Checking assert_cmd v2.0.11
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking diff v0.1.13
[INFO] [stderr]     Checking assert_fs v1.0.13
[INFO] [stderr]     Checking yansi v0.5.1
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking proptest v1.1.0
[INFO] [stderr]     Checking pretty_assertions v1.3.0
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking human-panic v1.1.4
[INFO] [stderr]     Checking clap-verbosity-flag v1.0.1
[INFO] [stderr]     Checking rstest v0.15.0
[INFO] [stderr]     Checking zstd v0.12.3+zstd.1.5.2
[INFO] [stderr]     Checking niffler v2.5.0
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.3.1
[INFO] [stderr]     Checking circkit v0.1.0 (/opt/rustwide/workdir/lib)
[INFO] [stderr]     Checking circkit-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `crate::canonicalize`
[INFO] [stdout]    --> lib/src/monomerize.rs:497:13
[INFO] [stdout]     |
[INFO] [stdout] 497 |         use crate::canonicalize;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `assert_ne`
[INFO] [stdout]    --> lib/src/monomerize.rs:500:44
[INFO] [stdout]     |
[INFO] [stdout] 500 |         use pretty_assertions::{assert_eq, assert_ne};
[INFO] [stdout]     |                                            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 08s
[INFO] running `Command { std: "docker" "inspect" "6ebadcd36017002226ee0cefab4cf8bb88e78cd1e70e3ae4b3a38446bdcb9397", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ebadcd36017002226ee0cefab4cf8bb88e78cd1e70e3ae4b3a38446bdcb9397", kill_on_drop: false }`
[INFO] [stdout] 6ebadcd36017002226ee0cefab4cf8bb88e78cd1e70e3ae4b3a38446bdcb9397
[INFO] checking Benjamin-Lee/circkit against try#645bb72776a6a56a1a8f52631a44bd082b2ba509 for absurd-question-mark-desugar
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FBenjamin-Lee%2Fcirckit" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Benjamin-Lee/circkit on toolchain 645bb72776a6a56a1a8f52631a44bd082b2ba509
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] finished tweaking git repo https://github.com/Benjamin-Lee/circkit
[INFO] tweaked toml for git repo https://github.com/Benjamin-Lee/circkit written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] crate git repo https://github.com/Benjamin-Lee/circkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 553de7fc2b8c7c0e7be2e0a68a8a32f189c0e72769b638d62784c37034f54ee5
[INFO] running `Command { std: "docker" "start" "-a" "553de7fc2b8c7c0e7be2e0a68a8a32f189c0e72769b638d62784c37034f54ee5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "553de7fc2b8c7c0e7be2e0a68a8a32f189c0e72769b638d62784c37034f54ee5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "553de7fc2b8c7c0e7be2e0a68a8a32f189c0e72769b638d62784c37034f54ee5", kill_on_drop: false }`
[INFO] [stdout] 553de7fc2b8c7c0e7be2e0a68a8a32f189c0e72769b638d62784c37034f54ee5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+645bb72776a6a56a1a8f52631a44bd082b2ba509" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f7c502a86e9f54b18ec90cd8b67f36e6c4a376810e9112c1af152da2447c5f20
[INFO] running `Command { std: "docker" "start" "-a" "f7c502a86e9f54b18ec90cd8b67f36e6c4a376810e9112c1af152da2447c5f20", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.141
[INFO] [stderr]    Compiling proc-macro2 v1.0.66
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling libm v0.2.6
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]    Compiling serde v1.0.183
[INFO] [stderr]    Compiling serde_derive v1.0.183
[INFO] [stderr]     Checking aho-corasick v0.7.20
[INFO] [stderr]    Compiling io-lifetimes v1.0.10
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling quote v1.0.32
[INFO] [stderr]    Compiling syn v2.0.28
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]     Checking regex v1.7.3
[INFO] [stderr]    Compiling jobserver v0.1.26
[INFO] [stderr]    Compiling rustix v0.37.12
[INFO] [stderr]    Compiling cc v1.0.79
[INFO] [stderr]     Checking getrandom v0.2.9
[INFO] [stderr]     Checking rand_core v0.6.4
[INFO] [stderr]     Checking linux-raw-sys v0.3.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]     Checking once_cell v1.17.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking bytemuck v1.13.1
[INFO] [stderr]    Compiling thiserror v1.0.40
[INFO] [stderr]    Compiling paste v1.0.12
[INFO] [stderr]     Checking rand v0.8.5
[INFO] [stderr]     Checking safe_arch v0.6.0
[INFO] [stderr]     Checking num-complex v0.4.3
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking either v1.8.1
[INFO] [stderr]    Compiling typenum v1.16.0
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]     Checking miniz_oxide v0.6.2
[INFO] [stderr]     Checking matrixmultiply v0.3.2
[INFO] [stderr]     Checking itertools v0.10.5
[INFO] [stderr]     Checking wide v0.7.8
[INFO] [stderr]    Compiling zstd-sys v2.0.8+zstd.1.5.5
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]    Compiling crc32fast v1.3.2
[INFO] [stderr]    Compiling semver v1.0.17
[INFO] [stderr]    Compiling futures-core v0.3.28
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling slab v0.4.8
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]    Compiling futures-channel v0.3.28
[INFO] [stderr]    Compiling futures-task v0.3.28
[INFO] [stderr]    Compiling anyhow v1.0.70
[INFO] [stderr]     Checking anstyle v1.0.0
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]     Checking itoa v1.0.6
[INFO] [stderr]     Checking ryu v1.0.13
[INFO] [stderr]     Checking bytecount v0.6.3
[INFO] [stderr]    Compiling zstd-safe v6.0.5+zstd.1.5.4
[INFO] [stderr]    Compiling futures-util v0.3.28
[INFO] [stderr]     Checking futures-sink v0.3.28
[INFO] [stderr]     Checking bstr v1.4.0
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking petgraph v0.6.3
[INFO] [stderr]    Compiling darling_core v0.14.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling rustc_version v0.4.0
[INFO] [stderr]     Checking flate2 v1.0.25
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.40
[INFO] [stderr]    Compiling futures-macro v0.3.28
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking serde_spanned v0.6.1
[INFO] [stderr]     Checking toml_datetime v0.6.1
[INFO] [stderr]     Checking is-terminal v0.4.7
[INFO] [stderr]     Checking ndarray v0.15.6
[INFO] [stderr]    Compiling backtrace v0.3.67
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v3.6.0
[INFO] [stderr]     Checking gimli v0.27.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]     Checking fastrand v1.9.0
[INFO] [stderr]     Checking os_str_bytes v6.5.1
[INFO] [stderr]     Checking strum v0.24.1
[INFO] [stderr]     Checking termcolor v1.2.0
[INFO] [stderr]     Checking futures-io v0.3.28
[INFO] [stderr]     Checking winnow v0.4.1
[INFO] [stderr]     Checking anstyle-parse v0.2.0
[INFO] [stderr]     Checking buffer-redux v1.0.0
[INFO] [stderr]     Checking clap_lex v0.2.4
[INFO] [stderr]     Checking tempfile v3.5.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]    Compiling rstest_macros v0.14.0
[INFO] [stderr]     Checking wait-timeout v0.2.0
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking object v0.30.3
[INFO] [stderr]     Checking aho-corasick v1.0.1
[INFO] [stderr]    Compiling darling_macro v0.14.4
[INFO] [stderr]    Compiling darling v0.14.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive_builder_core v0.11.2
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]     Checking addr2line v0.19.0
[INFO] [stderr]    Compiling derive_builder_macro v0.11.2
[INFO] [stderr]     Checking toml_edit v0.19.8
[INFO] [stderr]     Checking nalgebra v0.29.0
[INFO] [stderr]    Compiling clap_derive v3.2.25
[INFO] [stderr]     Checking anstyle-query v1.0.0
[INFO] [stderr]     Checking predicates-core v1.0.6
[INFO] [stderr]     Checking rustc-demangle v0.1.23
[INFO] [stderr]     Checking textwrap v0.16.0
[INFO] [stderr]     Checking derive_builder v0.11.2
[INFO] [stderr]     Checking anstream v0.3.0
[INFO] [stderr]     Checking walkdir v2.3.3
[INFO] [stderr]     Checking futures-executor v0.3.28
[INFO] [stderr]     Checking bgzip v0.2.2
[INFO] [stderr]     Checking globset v0.4.10
[INFO] [stderr]     Checking os_info v3.7.0
[INFO] [stderr]     Checking thread_local v1.1.7
[INFO] [stderr]     Checking uuid v1.3.1
[INFO] [stderr]     Checking float-cmp v0.9.0
[INFO] [stderr]     Checking bio-types v1.0.0
[INFO] [stderr]     Checking termtree v0.4.1
[INFO] [stderr]     Checking difflib v0.4.0
[INFO] [stderr]     Checking normalize-line-endings v0.3.0
[INFO] [stderr]     Checking predicates-tree v1.0.9
[INFO] [stderr]     Checking seq_io v0.3.2
[INFO] [stderr]     Checking env_logger v0.10.0
[INFO] [stderr]     Checking predicates v3.0.3
[INFO] [stderr]     Checking ignore v0.4.20
[INFO] [stderr]     Checking futures v0.3.28
[INFO] [stderr]     Checking num_cpus v1.15.0
[INFO] [stderr]     Checking toml v0.7.3
[INFO] [stderr]     Checking futures-timer v3.0.2
[INFO] [stderr]     Checking nohash-hasher v0.2.0
[INFO] [stderr]     Checking xxhash-rust v0.8.6
[INFO] [stderr]     Checking assert_cmd v2.0.11
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking rand_xorshift v0.3.0
[INFO] [stderr]     Checking globwalk v0.8.1
[INFO] [stderr]     Checking yansi v0.5.1
[INFO] [stderr]     Checking rusty-fork v0.3.0
[INFO] [stderr]     Checking diff v0.1.13
[INFO] [stderr]     Checking human-panic v1.1.4
[INFO] [stderr]     Checking assert_fs v1.0.13
[INFO] [stderr]     Checking quick-error v2.0.1
[INFO] [stderr]     Checking unarray v0.1.4
[INFO] [stderr]     Checking pretty_assertions v1.3.0
[INFO] [stderr]     Checking proptest v1.1.0
[INFO] [stderr]     Checking clap v3.2.25
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking needletail v0.5.1
[INFO] [stderr]     Checking rstest v0.15.0
[INFO] [stderr]     Checking clap-verbosity-flag v1.0.1
[INFO] [stderr]     Checking zstd v0.12.3+zstd.1.5.2
[INFO] [stderr]     Checking niffler v2.5.0
[INFO] [stderr]     Checking statrs v0.16.0
[INFO] [stderr]     Checking bio v1.3.1
[INFO] [stderr]     Checking circkit v0.1.0 (/opt/rustwide/workdir/lib)
[INFO] [stderr]     Checking circkit-cli v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `crate::canonicalize`
[INFO] [stdout]    --> lib/src/monomerize.rs:497:13
[INFO] [stdout]     |
[INFO] [stdout] 497 |         use crate::canonicalize;
[INFO] [stdout]     |             ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `assert_ne`
[INFO] [stdout]    --> lib/src/monomerize.rs:500:44
[INFO] [stdout]     |
[INFO] [stdout] 500 |         use pretty_assertions::{assert_eq, assert_ne};
[INFO] [stdout]     |                                            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `check_fasta` is never used
[INFO] [stdout]  --> tests/common.rs:7:8
[INFO] [stdout]   |
[INFO] [stdout] 7 | pub fn check_fasta(directory: &str, cmd: &mut Command) -> anyhow::Result<()> {
[INFO] [stdout]   |        ^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 44s
[INFO] running `Command { std: "docker" "inspect" "f7c502a86e9f54b18ec90cd8b67f36e6c4a376810e9112c1af152da2447c5f20", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f7c502a86e9f54b18ec90cd8b67f36e6c4a376810e9112c1af152da2447c5f20", kill_on_drop: false }`
[INFO] [stdout] f7c502a86e9f54b18ec90cd8b67f36e6c4a376810e9112c1af152da2447c5f20