[INFO] cloning repository https://github.com/lorewar2/bio_exp [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lorewar2/bio_exp" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 854a34d5f320c34e62f6a23f222971eb9edacc10 [INFO] checking lorewar2/bio_exp against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/lorewar2/bio_exp [INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp [INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-6-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 118 packages [INFO] [stderr] Adding aho-corasick v1.1.3 [INFO] [stderr] Adding anyhow v1.0.81 [INFO] [stderr] Adding approx v0.5.1 [INFO] [stderr] Adding autocfg v1.2.0 [INFO] [stderr] Adding bio v1.6.0 [INFO] [stderr] Adding bio-types v1.0.1 [INFO] [stderr] Adding bit-set v0.5.3 [INFO] [stderr] Adding bit-vec v0.6.3 [INFO] [stderr] Adding bv v0.11.1 [INFO] [stderr] Adding bytecount v0.6.7 [INFO] [stderr] Adding bytemuck v1.15.0 [INFO] [stderr] Adding byteorder v1.5.0 [INFO] [stderr] Adding bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Adding cc v1.0.90 [INFO] [stderr] Adding cfg-if v1.0.0 [INFO] [stderr] Adding cmake v0.1.50 [INFO] [stderr] Adding csv v1.3.0 [INFO] [stderr] Adding csv-core v0.1.11 [INFO] [stderr] Adding curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Adding custom_derive v0.1.7 [INFO] [stderr] Adding derive-new v0.5.9 (latest: v0.6.0) [INFO] [stderr] Adding editdistancek v1.0.2 [INFO] [stderr] Adding either v1.10.0 [INFO] [stderr] Adding enum-map v2.7.3 [INFO] [stderr] Adding enum-map-derive v0.17.0 [INFO] [stderr] Adding equivalent v1.0.1 [INFO] [stderr] Adding feature-probe v0.1.1 [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.6) [INFO] [stderr] Adding form_urlencoded v1.2.1 [INFO] [stderr] Adding fs-utils v1.1.4 [INFO] [stderr] Adding fxhash v0.2.1 [INFO] [stderr] Adding getrandom v0.2.13 [INFO] [stderr] Adding glob v0.3.1 [INFO] [stderr] Adding hashbrown v0.14.3 [INFO] [stderr] Adding heck v0.4.1 (latest: v0.5.0) [INFO] [stderr] Adding hts-sys v2.1.1 [INFO] [stderr] Adding idna v0.5.0 [INFO] [stderr] Adding ieee754 v0.2.6 [INFO] [stderr] Adding indexmap v2.2.6 [INFO] [stderr] Adding itertools v0.11.0 (latest: v0.12.1) [INFO] [stderr] Adding itertools-num v0.1.3 [INFO] [stderr] Adding itoa v1.0.11 [INFO] [stderr] Adding jobserver v0.1.28 [INFO] [stderr] Adding lazy_static v1.4.0 [INFO] [stderr] Adding libc v0.2.153 [INFO] [stderr] Adding libm v0.1.4 (latest: v0.2.8) [INFO] [stderr] Adding libm v0.2.8 [INFO] [stderr] Adding libz-sys v1.1.16 [INFO] [stderr] Adding linear-map v1.2.0 [INFO] [stderr] Adding logaddexp v0.1.3 [INFO] [stderr] Adding lzma-sys v0.1.20 [INFO] [stderr] Adding matrixmultiply v0.3.8 [INFO] [stderr] Adding memchr v2.7.2 [INFO] [stderr] Adding multimap v0.9.1 (latest: v0.10.0) [INFO] [stderr] Adding nalgebra v0.29.0 (latest: v0.32.5) [INFO] [stderr] Adding nalgebra-macros v0.1.0 (latest: v0.2.1) [INFO] [stderr] Adding ndarray v0.15.6 [INFO] [stderr] Adding newtype_derive v0.1.6 [INFO] [stderr] Adding num-complex v0.4.5 [INFO] [stderr] Adding num-integer v0.1.46 [INFO] [stderr] Adding num-rational v0.4.1 [INFO] [stderr] Adding num-traits v0.2.18 [INFO] [stderr] Adding openssl-src v300.2.3+3.2.1 [INFO] [stderr] Adding openssl-sys v0.9.102 [INFO] [stderr] Adding ordered-float v3.9.2 (latest: v4.2.0) [INFO] [stderr] Adding paste v1.0.14 [INFO] [stderr] Adding percent-encoding v2.3.1 [INFO] [stderr] Adding petgraph v0.6.4 [INFO] [stderr] Adding pkg-config v0.3.30 [INFO] [stderr] Adding ppv-lite86 v0.2.17 [INFO] [stderr] Adding proc-macro2 v1.0.79 [INFO] [stderr] Adding quick-error v1.2.3 (latest: v2.0.1) [INFO] [stderr] Adding quote v1.0.35 [INFO] [stderr] Adding rand v0.8.5 [INFO] [stderr] Adding rand_chacha v0.3.1 [INFO] [stderr] Adding rand_core v0.6.4 [INFO] [stderr] Adding rand_distr v0.4.3 [INFO] [stderr] Adding rawpointer v0.2.1 [INFO] [stderr] Adding regex v1.10.4 [INFO] [stderr] Adding regex-automata v0.4.6 [INFO] [stderr] Adding regex-syntax v0.8.3 [INFO] [stderr] Adding rust-htslib v0.46.0 [INFO] [stderr] Adding rustc_version v0.1.7 (latest: v0.4.0) [INFO] [stderr] Adding rustversion v1.0.14 [INFO] [stderr] Adding ryu v1.0.17 [INFO] [stderr] Adding safe_arch v0.7.1 [INFO] [stderr] Adding semver v0.1.20 (latest: v1.0.22) [INFO] [stderr] Adding serde v1.0.197 [INFO] [stderr] Adding serde_derive v1.0.197 [INFO] [stderr] Adding simba v0.6.0 (latest: v0.8.1) [INFO] [stderr] Adding statrs v0.16.0 [INFO] [stderr] Adding strum v0.25.0 (latest: v0.26.2) [INFO] [stderr] Adding strum_macros v0.25.3 (latest: v0.26.2) [INFO] [stderr] Adding syn v1.0.109 (latest: v2.0.58) [INFO] [stderr] Adding syn v2.0.58 [INFO] [stderr] Adding thiserror v1.0.58 [INFO] [stderr] Adding thiserror-impl v1.0.58 [INFO] [stderr] Adding tinyvec v1.6.0 [INFO] [stderr] Adding tinyvec_macros v0.1.1 [INFO] [stderr] Adding triple_accel v0.4.0 [INFO] [stderr] Adding typenum v1.17.0 [INFO] [stderr] Adding unicode-bidi v0.3.15 [INFO] [stderr] Adding unicode-ident v1.0.12 [INFO] [stderr] Adding unicode-normalization v0.1.23 [INFO] [stderr] Adding url v2.5.0 [INFO] [stderr] Adding vcpkg v0.2.15 [INFO] [stderr] Adding vec_map v0.8.2 [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.0+wasi-0.2.0) [INFO] [stderr] Adding wide v0.7.15 [INFO] [stderr] Adding windows-sys v0.52.0 [INFO] [stderr] Adding windows-targets v0.52.4 [INFO] [stderr] Adding windows_aarch64_gnullvm v0.52.4 [INFO] [stderr] Adding windows_aarch64_msvc v0.52.4 [INFO] [stderr] Adding windows_i686_gnu v0.52.4 [INFO] [stderr] Adding windows_i686_msvc v0.52.4 [INFO] [stderr] Adding windows_x86_64_gnu v0.52.4 [INFO] [stderr] Adding windows_x86_64_gnullvm v0.52.4 [INFO] [stderr] Adding windows_x86_64_msvc v0.52.4 [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded ieee754 v0.2.6 [INFO] [stderr] Downloaded logaddexp v0.1.3 [INFO] [stderr] Downloaded fs-utils v1.1.4 [INFO] [stderr] Downloaded enum-map-derive v0.17.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded enum-map v2.7.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bio v1.6.0 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded rust-htslib v0.46.0 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bb985f1a2d908213b874ff25bb54b063c57c8c173dc838e05ce95b9e0517b26e [INFO] running `Command { std: "docker" "start" "-a" "bb985f1a2d908213b874ff25bb54b063c57c8c173dc838e05ce95b9e0517b26e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bb985f1a2d908213b874ff25bb54b063c57c8c173dc838e05ce95b9e0517b26e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb985f1a2d908213b874ff25bb54b063c57c8c173dc838e05ce95b9e0517b26e", kill_on_drop: false }` [INFO] [stdout] bb985f1a2d908213b874ff25bb54b063c57c8c173dc838e05ce95b9e0517b26e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a81b40651d740b159eeee214904d09b08a70dca63c2def719ccb97b187f6a7e9 [INFO] running `Command { std: "docker" "start" "-a" "a81b40651d740b159eeee214904d09b08a70dca63c2def719ccb97b187f6a7e9", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling autocfg v1.2.0 [INFO] [stderr] Compiling pkg-config v0.3.30 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling vcpkg v0.2.15 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking memchr v2.7.2 [INFO] [stderr] Compiling serde v1.0.197 [INFO] [stderr] Checking bytemuck v1.15.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling jobserver v0.1.28 [INFO] [stderr] Checking getrandom v0.2.13 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling thiserror v1.0.58 [INFO] [stderr] Checking regex-syntax v0.8.3 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling cc v1.0.90 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling num-traits v0.2.18 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking wide v0.7.15 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking unicode-normalization v0.1.23 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Compiling anyhow v1.0.81 [INFO] [stderr] Checking indexmap v2.2.6 [INFO] [stderr] Compiling syn v2.0.58 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Compiling openssl-src v300.2.3+3.2.1 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking itoa v1.0.11 [INFO] [stderr] Compiling libm v0.1.4 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking either v1.10.0 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking ryu v1.0.17 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking bytecount v0.6.7 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Compiling libz-sys v1.1.16 [INFO] [stderr] Compiling openssl-sys v0.9.102 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Checking regex-automata v0.4.6 [INFO] [stderr] Checking url v2.5.0 [INFO] [stderr] Checking num-complex v0.4.5 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking logaddexp v0.1.3 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking regex v1.10.4 [INFO] [stderr] Compiling serde_derive v1.0.197 [INFO] [stderr] Compiling thiserror-impl v1.0.58 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking rust-htslib v0.46.0 [INFO] [stderr] Checking bio_exp v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `crate::misc::calculate_deep_quality` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use crate::misc::calculate_deep_quality; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::misc::calculate_deep_quality` [INFO] [stdout] --> src/main.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use crate::misc::calculate_deep_quality; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `total` is assigned to, but never used [INFO] [stdout] --> src/main.rs:49:21 [INFO] [stdout] | [INFO] [stdout] 49 | let mut total = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_total` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `hets` [INFO] [stdout] --> src/main.rs:50:21 [INFO] [stdout] | [INFO] [stdout] 50 | let mut hets = 0; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_hets` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:51:18 [INFO] [stdout] | [INFO] [stdout] 51 | for (i, _rec) in vcf_reader.records().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/main.rs:54:21 [INFO] [stdout] | [INFO] [stdout] 54 | let pos = rec.pos(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rec_chrom` [INFO] [stdout] --> src/main.rs:61:21 [INFO] [stdout] | [INFO] [stdout] 61 | let rec_chrom = rec.rid().expect("could not unwrap vcf record id"); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rec_chrom` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `genotype` [INFO] [stdout] --> src/main.rs:63:21 [INFO] [stdout] | [INFO] [stdout] 63 | let genotype = genotypes.get(0); // assume only 1 and get the first one [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_genotype` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:50:17 [INFO] [stdout] | [INFO] [stdout] 50 | let mut hets = 0; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `total` is assigned to, but never used [INFO] [stdout] --> src/main.rs:49:21 [INFO] [stdout] | [INFO] [stdout] 49 | let mut total = 0; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: consider using `_total` instead [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `hets` [INFO] [stdout] --> src/main.rs:50:21 [INFO] [stdout] | [INFO] [stdout] 50 | let mut hets = 0; [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_hets` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> src/main.rs:51:18 [INFO] [stdout] | [INFO] [stdout] 51 | for (i, _rec) in vcf_reader.records().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `pos` [INFO] [stdout] --> src/main.rs:54:21 [INFO] [stdout] | [INFO] [stdout] 54 | let pos = rec.pos(); [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_pos` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rec_chrom` [INFO] [stdout] --> src/main.rs:61:21 [INFO] [stdout] | [INFO] [stdout] 61 | let rec_chrom = rec.rid().expect("could not unwrap vcf record id"); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_rec_chrom` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `genotype` [INFO] [stdout] --> src/main.rs:63:21 [INFO] [stdout] | [INFO] [stdout] 63 | let genotype = genotypes.get(0); // assume only 1 and get the first one [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_genotype` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:50:17 [INFO] [stdout] | [INFO] [stdout] 50 | let mut hets = 0; [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 19s [INFO] running `Command { std: "docker" "inspect" "a81b40651d740b159eeee214904d09b08a70dca63c2def719ccb97b187f6a7e9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a81b40651d740b159eeee214904d09b08a70dca63c2def719ccb97b187f6a7e9", kill_on_drop: false }` [INFO] [stdout] a81b40651d740b159eeee214904d09b08a70dca63c2def719ccb97b187f6a7e9