[INFO] cloning repository https://github.com/dongspy/aligners [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/dongspy/aligners" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9130bcf741067460ac38e17d65c5cbc713fcbe9d [INFO] checking dongspy/aligners against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdongspy%2Faligners" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/dongspy/aligners on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/dongspy/aligners [INFO] finished tweaking git repo https://github.com/dongspy/aligners [INFO] tweaked toml for git repo https://github.com/dongspy/aligners written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/dongspy/aligners already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded smallvec v1.11.2 [INFO] [stderr] Downloaded thiserror-impl v1.0.50 [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded ordered-float v3.9.2 [INFO] [stderr] Downloaded nalgebra-macros v0.1.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded libm v0.2.8 [INFO] [stderr] Downloaded derive-new v0.5.9 [INFO] [stderr] Downloaded csv-core v0.1.11 [INFO] [stderr] Downloaded syn v2.0.39 [INFO] [stderr] Downloaded custom_derive v0.1.7 [INFO] [stderr] Downloaded ndarray v0.15.6 [INFO] [stderr] Downloaded nalgebra v0.29.0 [INFO] [stderr] Downloaded libc v0.2.150 [INFO] [stderr] Downloaded csv v1.3.0 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded getset v0.1.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded multimap v0.8.3 [INFO] [stderr] Downloaded semver v0.1.20 [INFO] [stderr] Downloaded rustc_version v0.1.7 [INFO] [stderr] Downloaded newtype_derive v0.1.6 [INFO] [stderr] Downloaded matrixmultiply v0.3.8 [INFO] [stderr] Downloaded rand_distr v0.4.3 [INFO] [stderr] Downloaded num-complex v0.4.4 [INFO] [stderr] Downloaded safe_arch v0.7.1 [INFO] [stderr] Downloaded wide v0.7.13 [INFO] [stderr] Downloaded simba v0.6.0 [INFO] [stderr] Downloaded strum_macros v0.25.3 [INFO] [stderr] Downloaded thiserror v1.0.50 [INFO] [stderr] Downloaded bio v1.4.0 [INFO] [stderr] Downloaded rayon-core v1.12.0 [INFO] [stderr] Downloaded rayon v1.8.0 [INFO] [stderr] Downloaded getrandom v0.2.11 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] [stderr] Downloaded serde_json v1.0.108 [INFO] [stderr] Downloaded debruijn v0.3.4 [INFO] [stderr] Downloaded serde v1.0.192 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded bytecount v0.6.7 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded serde_derive v1.0.192 [INFO] [stderr] Downloaded boomphf v0.5.9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] ee228a23ba07ae1b944316f2355ba05aee9e233269ac1d6bf3101df787c9fae8 [INFO] running `Command { std: "docker" "start" "-a" "ee228a23ba07ae1b944316f2355ba05aee9e233269ac1d6bf3101df787c9fae8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "ee228a23ba07ae1b944316f2355ba05aee9e233269ac1d6bf3101df787c9fae8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ee228a23ba07ae1b944316f2355ba05aee9e233269ac1d6bf3101df787c9fae8", kill_on_drop: false }` [INFO] [stdout] ee228a23ba07ae1b944316f2355ba05aee9e233269ac1d6bf3101df787c9fae8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] fc436c11b6011ddf51a9d8cc5635cee044f1ee1fd13693f9de75c71b0e97abbf [INFO] running `Command { std: "docker" "start" "-a" "fc436c11b6011ddf51a9d8cc5635cee044f1ee1fd13693f9de75c71b0e97abbf", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.69 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling libc v0.2.150 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling serde v1.0.192 [INFO] [stderr] Compiling crossbeam-utils v0.8.16 [INFO] [stderr] Compiling crossbeam-epoch v0.9.15 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Checking memchr v2.6.4 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking bytemuck v1.14.0 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Compiling rayon-core v1.12.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking either v1.9.0 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling syn v2.0.39 [INFO] [stderr] Checking wide v0.7.13 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Checking getrandom v0.2.11 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking num-complex v0.4.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking itoa v1.0.9 [INFO] [stderr] Compiling thiserror v1.0.50 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking ryu v1.0.15 [INFO] [stderr] Checking regex-automata v0.4.3 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling serde_json v1.0.108 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling anyhow v1.0.75 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking hashbrown v0.14.2 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking rayon v1.8.0 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking log v0.4.20 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking indexmap v2.1.0 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking regex v1.10.2 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking smallvec v1.11.2 [INFO] [stderr] Compiling serde_derive v1.0.192 [INFO] [stderr] Compiling thiserror-impl v1.0.50 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking bytecount v0.6.7 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.1.2 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking boomphf v0.5.9 [INFO] [stderr] Checking debruijn v0.3.4 [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.4.0 [INFO] [stderr] Checking lynxaligner v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `bio` is imported redundantly [INFO] [stdout] --> src/aligner.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bio; [INFO] [stdout] | ^^^ the item `bio` is already defined by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/aligner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `bio` is imported redundantly [INFO] [stdout] --> src/aligner.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bio; [INFO] [stdout] | ^^^ the item `bio` is already defined by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize` [INFO] [stdout] --> src/aligner.rs:4:13 [INFO] [stdout] | [INFO] [stdout] 4 | use serde::{Deserialize, Serialize}; [INFO] [stdout] | ^^^^^^^^^^^ ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `quals` [INFO] [stdout] --> src/aligner.rs:155:9 [INFO] [stdout] | [INFO] [stdout] 155 | let quals = vec![30; 8]; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/aligner.rs:153:9 [INFO] [stdout] | [INFO] [stdout] 153 | let mut align_helper = Aligner::new(&refs, scoring, 8, 8); [INFO] [stdout] | ----^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `quals` [INFO] [stdout] --> src/aligner.rs:173:9 [INFO] [stdout] | [INFO] [stdout] 173 | let quals = vec![30; 8]; [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_quals` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 13s [INFO] running `Command { std: "docker" "inspect" "fc436c11b6011ddf51a9d8cc5635cee044f1ee1fd13693f9de75c71b0e97abbf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fc436c11b6011ddf51a9d8cc5635cee044f1ee1fd13693f9de75c71b0e97abbf", kill_on_drop: false }` [INFO] [stdout] fc436c11b6011ddf51a9d8cc5635cee044f1ee1fd13693f9de75c71b0e97abbf