[INFO] cloning repository https://github.com/davidlougheed/strkit_rust_ext [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/davidlougheed/strkit_rust_ext" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 56acdd43edc830a4dc09c8b66f03d422e539c1e2 [INFO] checking davidlougheed/strkit_rust_ext against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fdavidlougheed%2Fstrkit_rust_ext" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/davidlougheed/strkit_rust_ext on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/davidlougheed/strkit_rust_ext [INFO] finished tweaking git repo https://github.com/davidlougheed/strkit_rust_ext [INFO] tweaked toml for git repo https://github.com/davidlougheed/strkit_rust_ext written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/davidlougheed/strkit_rust_ext already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/rust-bio/rust-bio.git` [INFO] [stderr] Updating git repository `https://github.com/PyO3/rust-numpy.git` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded pyo3-macros v0.21.0-beta.0 [INFO] [stderr] Downloaded thiserror-impl v1.0.55 [INFO] [stderr] Downloaded thiserror v1.0.55 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded pyo3-build-config v0.21.0-beta.0 [INFO] [stderr] Downloaded pyo3-macros-backend v0.21.0-beta.0 [INFO] [stderr] Downloaded pyo3 v0.21.0-beta.0 [INFO] [stderr] Downloaded rust-htslib v0.45.0 [INFO] [stderr] Downloaded pyo3-ffi v0.21.0-beta.0 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded hts-sys v2.1.1 [INFO] [stderr] Downloaded openssl-src v300.2.2+3.2.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7903381c80a15b441c2d3102000d570751307c81d22bcb269ab4177b80174c2f [INFO] running `Command { std: "docker" "start" "-a" "7903381c80a15b441c2d3102000d570751307c81d22bcb269ab4177b80174c2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7903381c80a15b441c2d3102000d570751307c81d22bcb269ab4177b80174c2f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7903381c80a15b441c2d3102000d570751307c81d22bcb269ab4177b80174c2f", kill_on_drop: false }` [INFO] [stdout] 7903381c80a15b441c2d3102000d570751307c81d22bcb269ab4177b80174c2f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3a322cabd6af90d4f42eeb32f1d4d89252048567099d14463a3e89778632b627 [INFO] running `Command { std: "docker" "start" "-a" "3a322cabd6af90d4f42eeb32f1d4d89252048567099d14463a3e89778632b627", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.66 [INFO] [stderr] Compiling unicode-ident v1.0.11 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling pkg-config v0.3.29 [INFO] [stderr] Compiling libm v0.2.8 [INFO] [stderr] Compiling target-lexicon v0.12.11 [INFO] [stderr] Compiling once_cell v1.18.0 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking memchr v2.7.1 [INFO] [stderr] Compiling heck v0.4.1 [INFO] [stderr] Compiling serde v1.0.193 [INFO] [stderr] Checking ppv-lite86 v0.2.17 [INFO] [stderr] Compiling num-traits v0.2.17 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Compiling matrixmultiply v0.3.8 [INFO] [stderr] Checking getrandom v0.2.12 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling rustversion v1.0.14 [INFO] [stderr] Compiling paste v1.0.14 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking bytemuck v1.14.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling num-rational v0.4.1 [INFO] [stderr] Compiling typenum v1.17.0 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling thiserror v1.0.55 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Checking regex-syntax v0.8.2 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling memoffset v0.9.0 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling portable-atomic v1.6.0 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling quote v1.0.33 [INFO] [stderr] Compiling jobserver v0.1.28 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking wide v0.7.15 [INFO] [stderr] Checking parking_lot_core v0.9.8 [INFO] [stderr] Compiling pyo3-build-config v0.21.0-beta.0 [INFO] [stderr] Compiling syn v2.0.32 [INFO] [stderr] Compiling cc v1.0.83 [INFO] [stderr] Checking unicode-normalization v0.1.22 [INFO] [stderr] Compiling anyhow v1.0.79 [INFO] [stderr] Checking parking_lot v0.12.1 [INFO] [stderr] Checking indexmap v2.2.2 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking either v1.9.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking ryu v1.0.16 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking unindent v0.2.3 [INFO] [stderr] Compiling indoc v2.0.4 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking num-complex v0.4.4 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking idna v0.5.0 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Compiling openssl-src v300.2.2+3.2.1 [INFO] [stderr] Compiling cmake v0.1.50 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking url v2.5.0 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking rustc-hash v1.1.0 [INFO] [stderr] Checking bytecount v0.6.7 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking strsim v0.11.0 [INFO] [stderr] Compiling pyo3-ffi v0.21.0-beta.0 [INFO] [stderr] Compiling pyo3 v0.21.0-beta.0 [INFO] [stderr] Compiling libz-sys v1.1.15 [INFO] [stderr] Compiling openssl-sys v0.9.99 [INFO] [stderr] Compiling curl-sys v0.4.72+curl-8.6.0 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling hts-sys v2.1.1 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking regex-automata v0.4.5 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling pyo3-macros-backend v0.21.0-beta.0 [INFO] [stderr] Checking regex v1.10.3 [INFO] [stderr] Compiling serde_derive v1.0.193 [INFO] [stderr] Compiling thiserror-impl v1.0.55 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Compiling pyo3-macros v0.21.0-beta.0 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking numpy v0.20.0 (https://github.com/PyO3/rust-numpy.git?rev=f5930b6#f5930b6d) [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.5.0 (https://github.com/rust-bio/rust-bio.git?rev=440cb1c#440cb1ce) [INFO] [stderr] Checking rust-htslib v0.45.0 [INFO] [stderr] Checking strkit_rust_ext v0.10.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `PyAny` is imported redundantly [INFO] [stdout] --> src/strkit/locus.rs:3:19 [INFO] [stdout] | [INFO] [stdout] 2 | use pyo3::prelude::*; [INFO] [stdout] | ---------------- the item `PyAny` is already imported here [INFO] [stdout] 3 | use pyo3::types::{PyAny, PyDict, PyList}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `PyAny` is imported redundantly [INFO] [stdout] --> src/strkit/locus.rs:3:19 [INFO] [stdout] | [INFO] [stdout] 2 | use pyo3::prelude::*; [INFO] [stdout] | ---------------- the item `PyAny` is already imported here [INFO] [stdout] 3 | use pyo3::types::{PyAny, PyDict, PyList}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `bytecount` is imported redundantly [INFO] [stdout] --> src/strkit/snvs.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bytecount; [INFO] [stdout] | ^^^^^^^^^ the item `bytecount` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `bytecount` is imported redundantly [INFO] [stdout] --> src/strkit/snvs.rs:1:5 [INFO] [stdout] | [INFO] [stdout] 1 | use bytecount; [INFO] [stdout] | ^^^^^^^^^ the item `bytecount` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 29s [INFO] running `Command { std: "docker" "inspect" "3a322cabd6af90d4f42eeb32f1d4d89252048567099d14463a3e89778632b627", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3a322cabd6af90d4f42eeb32f1d4d89252048567099d14463a3e89778632b627", kill_on_drop: false }` [INFO] [stdout] 3a322cabd6af90d4f42eeb32f1d4d89252048567099d14463a3e89778632b627