[INFO] cloning repository https://github.com/10XGenomics/rust-pseudoaligner [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/rust-pseudoaligner" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9d9cab8a1475bc7cd34169822620c77bce0d5930 [INFO] checking 10XGenomics/rust-pseudoaligner against master#385fa9d845dd326c6bbfd58c22244215e431948a for absurd-question-mark-desugar [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Frust-pseudoaligner" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/10XGenomics/rust-pseudoaligner on toolchain 385fa9d845dd326c6bbfd58c22244215e431948a [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] finished tweaking git repo https://github.com/10XGenomics/rust-pseudoaligner [INFO] tweaked toml for git repo https://github.com/10XGenomics/rust-pseudoaligner written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/10XGenomics/rust-pseudoaligner already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Updating git repository `https://github.com/10XGenomics/rust-debruijn` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded enum-map-derive v0.6.0 [INFO] [stderr] Downloaded getset v0.0.9 [INFO] [stderr] Downloaded tempfile v3.10.0 [INFO] [stderr] Downloaded strum v0.23.0 [INFO] [stderr] Downloaded boomphf v0.6.0 [INFO] [stderr] Downloaded is-terminal v0.4.10 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded bio-types v1.0.1 [INFO] [stderr] Downloaded enum-map v1.1.1 [INFO] [stderr] Downloaded num-complex v0.4.1 [INFO] [stderr] Downloaded matrixmultiply v0.3.2 [INFO] [stderr] Downloaded anyhow v1.0.79 [INFO] [stderr] Downloaded indexmap v2.2.2 [INFO] [stderr] Downloaded ndarray v0.15.4 [INFO] [stderr] Downloaded bio v1.5.0 [INFO] [stderr] Downloaded regex-automata v0.4.5 [INFO] [stderr] Downloaded regex v1.10.3 [INFO] [stderr] Downloaded rustix v0.38.31 [INFO] [stderr] Downloaded rayon v1.8.1 [INFO] [stderr] Downloaded wide v0.7.13 [INFO] [stderr] Downloaded statrs v0.16.0 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded bitflags v2.4.2 [INFO] [stderr] Downloaded ordered-float v3.7.0 [INFO] [stderr] Downloaded strum_macros v0.23.1 [INFO] [stderr] Downloaded wyhash v0.5.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7502d2444d721587f5386e558d845469335d9fcd9815c14fdc0c979aeac84d4c [INFO] running `Command { std: "docker" "start" "-a" "7502d2444d721587f5386e558d845469335d9fcd9815c14fdc0c979aeac84d4c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7502d2444d721587f5386e558d845469335d9fcd9815c14fdc0c979aeac84d4c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7502d2444d721587f5386e558d845469335d9fcd9815c14fdc0c979aeac84d4c", kill_on_drop: false }` [INFO] [stdout] 7502d2444d721587f5386e558d845469335d9fcd9815c14fdc0c979aeac84d4c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:2788e3201cd34a07e3172128adcd8b3090168a8e3bcc40d7c032b9dda1df7d1c" "/opt/rustwide/cargo-home/bin/cargo" "+385fa9d845dd326c6bbfd58c22244215e431948a" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 415e154ae7e08780ab87ab149b4743f05f52fb23c0ace3f0747547717fdebc0a [INFO] running `Command { std: "docker" "start" "-a" "415e154ae7e08780ab87ab149b4743f05f52fb23c0ace3f0747547717fdebc0a", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.39 [INFO] [stderr] Compiling unicode-ident v1.0.0 [INFO] [stderr] Compiling syn v1.0.96 [INFO] [stderr] Compiling libc v0.2.152 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling serde_derive v1.0.147 [INFO] [stderr] Compiling serde v1.0.147 [INFO] [stderr] Checking memchr v2.7.1 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling crossbeam-epoch v0.9.8 [INFO] [stderr] Compiling num-integer v0.1.45 [INFO] [stderr] Checking bitflags v2.4.2 [INFO] [stderr] Checking bytemuck v1.14.0 [INFO] [stderr] Compiling num-rational v0.4.0 [INFO] [stderr] Compiling rustversion v1.0.6 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking safe_arch v0.7.1 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking either v1.6.1 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking matrixmultiply v0.3.2 [INFO] [stderr] Compiling paste v1.0.7 [INFO] [stderr] Checking itoa v1.0.10 [INFO] [stderr] Compiling unicode-segmentation v1.9.0 [INFO] [stderr] Checking bit-set v0.5.2 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Checking crossbeam-deque v0.8.1 [INFO] [stderr] Compiling anyhow v1.0.79 [INFO] [stderr] Compiling serde_json v1.0.99 [INFO] [stderr] Checking smallvec v1.10.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking rayon-core v1.12.1 [INFO] [stderr] Checking wide v0.7.13 [INFO] [stderr] Checking aho-corasick v1.1.2 [INFO] [stderr] Compiling heck v0.3.3 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking indexmap v2.2.2 [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking miniz_oxide v0.7.1 [INFO] [stderr] Checking lock_api v0.4.11 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking getrandom v0.2.6 [INFO] [stderr] Checking parking_lot_core v0.9.9 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking strum v0.23.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking dashmap v5.5.3 [INFO] [stderr] Checking rayon v1.8.1 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking wait-timeout v0.2.0 [INFO] [stderr] Checking unarray v0.1.4 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking wyhash v0.5.0 [INFO] [stderr] Checking rand_xorshift v0.3.0 [INFO] [stderr] Checking flate2 v1.0.28 [INFO] [stderr] Checking petgraph v0.6.4 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking num-complex v0.4.1 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v3.7.0 [INFO] [stderr] Checking regex-automata v0.4.5 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking ndarray v0.15.4 [INFO] [stderr] Checking is-terminal v0.4.10 [INFO] [stderr] Checking tempfile v3.10.0 [INFO] [stderr] Checking rusty-fork v0.3.0 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking proptest v1.4.0 [INFO] [stderr] Checking regex v1.10.3 [INFO] [stderr] Checking env_logger v0.10.2 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling thiserror-impl v1.0.31 [INFO] [stderr] Compiling strum_macros v0.23.1 [INFO] [stderr] Compiling enum-map-derive v0.6.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Checking pretty_env_logger v0.5.0 [INFO] [stderr] Checking enum-map v1.1.1 [INFO] [stderr] Checking thiserror v1.0.31 [INFO] [stderr] Checking bio-types v1.0.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Checking multimap v0.8.3 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking boomphf v0.6.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking docopt v1.1.1 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking debruijn v0.3.4 (https://github.com/10XGenomics/rust-debruijn#8d9a5c52) [INFO] [stderr] Checking statrs v0.16.0 [INFO] [stderr] Checking bio v1.5.0 [INFO] [stderr] Checking debruijn_mapping v0.6.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: the item `debruijn` is imported redundantly [INFO] [stdout] --> src/build_index.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use debruijn; [INFO] [stdout] | ^^^^^^^^ the item `debruijn` is already defined by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `boomphf` is imported redundantly [INFO] [stdout] --> src/build_index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use boomphf; [INFO] [stdout] | ^^^^^^^ the item `boomphf` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rayon` is imported redundantly [INFO] [stdout] --> src/build_index.rs:23:13 [INFO] [stdout] | [INFO] [stdout] 23 | use rayon::{self, ThreadPool}; [INFO] [stdout] | ^^^^ the item `rayon` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `std` is imported redundantly [INFO] [stdout] --> src/pseudoaligner.rs:8:11 [INFO] [stdout] | [INFO] [stdout] 8 | use std::{self, fs::File, str}; [INFO] [stdout] | ^^^^ the item `std` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `anyhow` is imported redundantly [INFO] [stdout] --> src/utils.rs:11:14 [INFO] [stdout] | [INFO] [stdout] 11 | use anyhow::{self, Error}; [INFO] [stdout] | ^^^^ the item `anyhow` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `bincode` is imported redundantly [INFO] [stdout] --> src/utils.rs:12:15 [INFO] [stdout] | [INFO] [stdout] 12 | use bincode::{self, deserialize_from, serialize_into}; [INFO] [stdout] | ^^^^ the item `bincode` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `boomphf` is imported redundantly [INFO] [stdout] --> src/build_index.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use boomphf; [INFO] [stdout] | ^^^^^^^ the item `boomphf` is already defined by prelude [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `rayon` is imported redundantly [INFO] [stdout] --> src/build_index.rs:23:13 [INFO] [stdout] | [INFO] [stdout] 23 | use rayon::{self, ThreadPool}; [INFO] [stdout] | ^^^^ the item `rayon` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `FromIterator` is imported redundantly [INFO] [stdout] --> src/pseudoaligner.rs:524:9 [INFO] [stdout] | [INFO] [stdout] 524 | use std::iter::FromIterator; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] --> /rustc/385fa9d845dd326c6bbfd58c22244215e431948a/library/std/src/prelude/mod.rs:148:13 [INFO] [stdout] | [INFO] [stdout] = note: the item `FromIterator` is already defined here [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `anyhow` is imported redundantly [INFO] [stdout] --> src/utils.rs:11:14 [INFO] [stdout] | [INFO] [stdout] 11 | use anyhow::{self, Error}; [INFO] [stdout] | ^^^^ the item `anyhow` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: the item `bincode` is imported redundantly [INFO] [stdout] --> src/utils.rs:12:15 [INFO] [stdout] | [INFO] [stdout] 12 | use bincode::{self, deserialize_from, serialize_into}; [INFO] [stdout] | ^^^^ the item `bincode` is already defined by prelude [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 6 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 5 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 39.76s [INFO] running `Command { std: "docker" "inspect" "415e154ae7e08780ab87ab149b4743f05f52fb23c0ace3f0747547717fdebc0a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "415e154ae7e08780ab87ab149b4743f05f52fb23c0ace3f0747547717fdebc0a", kill_on_drop: false }` [INFO] [stdout] 415e154ae7e08780ab87ab149b4743f05f52fb23c0ace3f0747547717fdebc0a