[INFO] cloning repository https://github.com/clinico-omics/preqc-pack
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/preqc-pack" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
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[INFO] checking clinico-omics/preqc-pack against master#bdcb6a99e853732f8ec050ae4986aa3af51d44c5 for 92191_revert
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fpreqc-pack" "/workspace/builds/worker-106/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-106/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clinico-omics/preqc-pack on toolchain bdcb6a99e853732f8ec050ae4986aa3af51d44c5
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+bdcb6a99e853732f8ec050ae4986aa3af51d44c5" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/clinico-omics/preqc-pack
[INFO] finished tweaking git repo https://github.com/clinico-omics/preqc-pack
[INFO] tweaked toml for git repo https://github.com/clinico-omics/preqc-pack written to /workspace/builds/worker-106/source/Cargo.toml
[INFO] crate git repo https://github.com/clinico-omics/preqc-pack already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+bdcb6a99e853732f8ec050ae4986aa3af51d44c5" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stdout] warning: unused import: `blake2::Blake2b`
[INFO] [stdout]  --> src/qc/mislabeling.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use blake2::Blake2b;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `md5::Md5`
[INFO] [stdout]  --> src/qc/mislabeling.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use md5::Md5;
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize`
[INFO] [stdout]  --> src/qc/util.rs:1:13
[INFO] [stdout]   |
[INFO] [stdout] 1 | use serde::{Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `log::*`
[INFO] [stdout]  --> src/qc/hasher.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use log::*;
[INFO] [stdout]   |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `blake2::Blake2b`
[INFO] [stdout]  --> src/qc/mislabeling.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use blake2::Blake2b;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `md5::Md5`
[INFO] [stdout]  --> src/qc/mislabeling.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use md5::Md5;
[INFO] [stdout]   |     ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `Deserialize`, `Serialize`
[INFO] [stdout]  --> src/qc/util.rs:1:13
[INFO] [stdout]   |
[INFO] [stdout] 1 | use serde::{Deserialize, Serialize};
[INFO] [stdout]   |             ^^^^^^^^^^^  ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `log::*`
[INFO] [stdout]  --> src/qc/hasher.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use log::*;
[INFO] [stdout]   |     ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_a_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:528:6
[INFO] [stdout]     |
[INFO] [stdout] 528 |   fn add_to_a_count(&mut self, a_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_t_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:532:6
[INFO] [stdout]     |
[INFO] [stdout] 532 |   fn add_to_t_count(&mut self, t_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_c_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:536:6
[INFO] [stdout]     |
[INFO] [stdout] 536 |   fn add_to_c_count(&mut self, c_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_g_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:540:6
[INFO] [stdout]     |
[INFO] [stdout] 540 |   fn add_to_g_count(&mut self, g_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_n_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:544:6
[INFO] [stdout]     |
[INFO] [stdout] 544 |   fn add_to_n_count(&mut self, n_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `length`
[INFO] [stdout]   --> src/qc/mislabeling.rs:14:3
[INFO] [stdout]    |
[INFO] [stdout] 14 |   length: usize,
[INFO] [stdout]    |   ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]   --> src/qc/mislabeling.rs:11:10
[INFO] [stdout]    |
[INFO] [stdout] 11 | #[derive(Debug, Serialize, Deserialize, Clone)]
[INFO] [stdout]    |          ^^^^^                          ^^^^^
[INFO] [stdout]    = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `hash`
[INFO] [stdout]    --> src/qc/mislabeling.rs:149:6
[INFO] [stdout]     |
[INFO] [stdout] 149 |   fn hash<D: Digest + Default>(&self, seq: &[u8]) -> String
[INFO] [stdout]     |      ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_a_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:528:6
[INFO] [stdout]     |
[INFO] [stdout] 528 |   fn add_to_a_count(&mut self, a_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_t_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:532:6
[INFO] [stdout]     |
[INFO] [stdout] 532 |   fn add_to_t_count(&mut self, t_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_c_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:536:6
[INFO] [stdout]     |
[INFO] [stdout] 536 |   fn add_to_c_count(&mut self, c_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_g_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:540:6
[INFO] [stdout]     |
[INFO] [stdout] 540 |   fn add_to_g_count(&mut self, g_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `add_to_n_count`
[INFO] [stdout]    --> src/qc/fastqc.rs:544:6
[INFO] [stdout]     |
[INFO] [stdout] 544 |   fn add_to_n_count(&mut self, n_count: usize) {
[INFO] [stdout]     |      ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `length`
[INFO] [stdout]   --> src/qc/mislabeling.rs:14:3
[INFO] [stdout]    |
[INFO] [stdout] 14 |   length: usize,
[INFO] [stdout]    |   ^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] note: `VAFMatrix` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis
[INFO] [stdout]   --> src/qc/mislabeling.rs:11:10
[INFO] [stdout]    |
[INFO] [stdout] 11 | #[derive(Debug, Serialize, Deserialize, Clone)]
[INFO] [stdout]    |          ^^^^^                          ^^^^^
[INFO] [stdout]    = note: this warning originates in the derive macro `Debug` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `hash`
[INFO] [stdout]    --> src/qc/mislabeling.rs:149:6
[INFO] [stdout]     |
[INFO] [stdout] 149 |   fn hash<D: Digest + Default>(&self, seq: &[u8]) -> String
[INFO] [stdout]     |      ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 11 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `indexes`
[INFO] [stdout]  --> examples/mislabeling.rs:5:18
[INFO] [stdout]   |
[INFO] [stdout] 5 |   let (patterns, indexes, count) = VAFMatrix::read_patterns("data/patterns.bson");
[INFO] [stdout]   |                  ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_indexes`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 24.85s
[INFO] running `Command { std: "docker" "inspect" "6ea43f6b75950431f4f8c575a80fd9f9302b6e9751f72d90a58de482e11d3848", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6ea43f6b75950431f4f8c575a80fd9f9302b6e9751f72d90a58de482e11d3848", kill_on_drop: false }`
[INFO] [stdout] 6ea43f6b75950431f4f8c575a80fd9f9302b6e9751f72d90a58de482e11d3848